A dynamic model of nutrient uptake by root hairs.

Root hairs are known to be important in the uptake of sparingly soluble nutrients by plants, but quantitative understanding of their role in this is weak. This limits, for example, the breeding of more nutrient-efficient crop genotypes. We developed a mathematical model of nutrient transport and uptake in the root hair zone of single roots growing in soil or solution culture.

Probing hydrogen peroxide oxidation kinetics of wild-type Synechocystis catalase-peroxidase (KatG) and selected variants.

Catalase-peroxidases (KatGs) are unique bifunctional heme peroxidases that exhibit peroxidase and substantial catalase activities. Nevertheless, the reaction pathway of hydrogen peroxide dismutation, including the electronic structure of the redox intermediate that actually oxidizes H(2)O(2), is not clearly defined. Several mutant proteins with diminished overall catalase but wild-type-like peroxidase activity have been described in the last years.

Harnessing ecosystem models and multi-criteria decision analysis for the support of forest management.

The decision-making environment in forest management (FM) has changed drastically during the last decades. Forest management planning is facing increasing complexity due to a widening portfolio of forest goods and services, a societal demand for a rational, transparent decision process and rising uncertainties concerning future environmental conditions (e.g.

Risk factors for lameness in freestall-housed dairy cows across two breeds, farming systems, and countries.

Lameness poses a considerable problem in modern dairy farming. Several new developments (e.g.

Genome-scale analysis of library sorting (GALibSo): Isolation of secretion enhancing factors for recombinant protein production in Pichia pastoris.

A method combining fluorescence activated cell sorting (FACS) and DNA microarray assisted clone identification was developed and termed Genome-Scale Analysis of Library Sorting (GALibSo). Genes enhancing the production of secreted heterologous proteins in Pichia pastoris were identified out of a cDNA library by cell surface display and FACS. The trends of gene enrichment during consecutive FACS rounds were monitored by DNA microarrays.

A new ultra-pressure liquid chromatography method for the determination of biogenic amines in cheese.

A fast and reliable ultra-performance liquid chromatography (UPLC) method for the determination of biogenic amines (ethanolamine, methylamine, agmatine, histamine, dimethylamine, ethylamine, octopamine, pyrrolidine, dopamine, isopropylamine, propylamine, tyramine, putrescine, butylamine, cadaverine, tryptamine, 2-phenylethylamine, 3-methylbutylamine, spermidine, spermine) in cheese was established. After pre-column derivatization with 6-aminoquinolyl-N-hydroxy-succinimidyl carbamate (AQC), 20 primary and secondary biogenic amines were separated on an Acquity UPLC column (BEH C(18), 1.7 microm; 2.

Identification and antimicrobial susceptibility of porcine bacteria that inhibit the growth of Brachyspira hyodysenteriae in vitro.

Aims: To identify bacilli, lactic acid bacteria and bifidobacteria that inhibit the growth of Brachyspira hyodysenteriae.

Methods And Results: A total of 80 isolates were obtained from various porcine intestinal compartments using selective conditions and grouped into 15 similarity clusters based on whole-cell protein profiles. Random amplified polymorphic DNA PCR patterns identified 24 genotypes.

Pyranose dehydrogenases: biochemical features and perspectives of technological applications.

Pyranose dehydrogenase is a fungal flavin-dependent sugar oxidoreductase which is structurally and catalytically related to fungal pyranose oxidase and cellobiose dehydrogenase and probably fulfills similar biological functions in lignocellulose breakdown. It is a monomeric secretory glycoprotein and is limited to a rather small group of litter-decomposing basidiomycetes. Compared with pyranose oxidase, it displays broader substrate specificity and a variable regioselectivity and is unable to utilize oxygen as electron acceptor using substituted benzoquinones and (organo) metallic ions instead.

Starch as a sugar reservoir for nematode-induced syncytia.

The plant parasitic nematode Heterodera schachtii invades the roots of Arabidopsis thaliana to induce nematode feeding structures in the central cylinder. During nematode development, the parasites feed exclusively from these structures. Thus, high sugar import and specific sugar processing of the affected plant cells is crucial for nematode development.

Diversity and activity of sugar transporters in nematode-induced root syncytia.

The plant-parasitic nematode Heterodera schachtii stimulates plant root cells to form syncytial feeding structures which synthesize all nutrients required for successful nematode development. Cellular re-arrangements and modified metabolism of the syncytia are accompanied by massive intra- and intercellular solute allocations. In this study the expression of all genes annotated as sugar transporters in the Arabidopsis Membrane Protein Library was investigated by Affymetrix gene chip analysis in young and fully developed syncytia compared with non-infected Arabidopsis thaliana roots.

Risk factors for lameness in cubicle housed Austrian Simmental dairy cows.

Austrian dairy farming is characterised by predominant use of Simmental cows on small-scale farms. Our aim was to identify lameness risk factors related to housing and management in cubicle housed Austrian dairy cows. Furthermore, we used animal-based parameters (ABP) as integrated measures of cubicle quality and feeding management.

Approaches to assess biocover performance on landfills.

Methane emissions from active or closed landfills can be reduced by means of methane oxidation enhanced in properly designed landfill covers, known as "biocovers". Biocovers usually consist of a coarse gas distribution layer to balance gas fluxes placed beneath an appropriate substrate layer. The application of such covers implies use of measurement methods and evaluation approaches, both during the planning stage and throughout the operation of biocovers in order to demonstrate their efficiency.

Cellobiose dehydrogenase from the ligninolytic basidiomycete Ceriporiopsis subvermispora.

Cellobiose dehydrogenase (CDH), an extracellular flavocytochrome produced by several wood-degrading fungi, was detected in cultures of the selective delignifier Ceriporiopsis subvermispora when grown on a cellulose- and yeast extract-based liquid medium. CDH amounted to up to 2.5% of total extracellular protein during latter phases of the cultivation and thus suggested an important function for the fungus under the given conditions.

Radon and other natural radionuclides in drinking water in Austria: measurement and assessment.

According to the European Drinking Water Directive 98/83/EC a pilot project for the assessment of the radiological situation of drinking water was realized in Austria. About 350 drinking water samples were taken in Upper Austria and analyzed for several natural radionuclides by different measuring techniques. Techniques are tested and compared and an overview of the results is given.

The effect of temperature on the proteome of recombinant Pichia pastoris.

The impact of environmental factors on the productivity of yeast cells is poorly investigated so far. Therefore, it is a major concern to improve the understanding of cellular physiology of microbial protein production hosts, including the methylotrophic yeast Pichia pastoris. Two-Dimensional Fluorescence Difference Gel electrophoresis and protein identification via mass spectrometry were applied to analyze the impact of cultivation temperature on the physiology of a heterologous protein secreting P.

Improving thermostability and catalytic activity of pyranose 2-oxidase from Trametes multicolor by rational and semi-rational design.

The fungal homotetrameric flavoprotein pyranose 2-oxidase (P2Ox; EC 1.1.3.

Occurrence, phylogeny, structure, and function of catalases and peroxidases in cyanobacteria.

Cyanobacteria have evolved approximately 3x10(9) years ago from ancient phototrophic microorganisms that already lived on our planet Earth. By opening the era of an aerobic, oxygen-containing biosphere, they are the true pacemakers of geological and biological evolution. Cyanobacteria must have been among the first organisms to elaborate mechanisms for the detoxification of partially reduced oxygen species including (hydrogen) peroxide.

Actual versus apparent within cell wall variability of nanoindentation results from wood cell walls related to cellulose microfibril angle.

Hardness and elastic modulus of spruce wood cell walls parallel to their axial direction were investigated by means of nanoindentation. In the secondary cell wall layer S2 of individual earlywood and compression wood tracheids, a systematic pattern variability was found. Several factors potentially affecting nanoindentation results were investigated, i.

Engineering of pyranose 2-oxidase: improvement for biofuel cell and food applications through semi-rational protein design.

Pyranose 2-oxidase (P2Ox) has several proposed biotechnological applications such as a bio-component in biofuel cells or for carbohydrate transformations. To improve some of the catalytic properties of P2Ox from Trametes multicolor, we selected a semi-rational approach of enzyme engineering, saturation mutagenesis of active-site residues and subsequent screening of mutant libraries for improved activity. One of the active-site mutants with improved catalytic characteristics identified was V546C, which showed catalytic constants increased by up to 5.

Performance and limitation of two dairy production systems in the North western Ethiopian highlands.

In order to characterise the dairy production systems as well as the productive and reproductive performance of dairy cows in the study area, a total of 256 and 54 dairy farms were used for survey and monitoring data collection, respectively. Based on breed, land size, feed and market accessibility, two major dairy production systems were identified: a rather specialized, urban, and a peri-urban dairy production system. Urban farmers owned larger herds but farmed less land, and sold a greater proportion of liquid milk than peri-urban farmers, who processed more milk.

Heme-copper oxidases and their electron donors in cyanobacterial respiratory electron transport.

Cyanobacteria are the paradigmatic organisms of oxygenic (plant-type) photosynthesis and aerobic respiration. Since there is still an amazing lack of knowledge on the role and mechanism of their respiratory electron transport, we have critically analyzed all fully or partially sequenced genomes for heme-copper oxidases and their (putative) electron donors cytochrome c(6), plastocyanin, and cytochrome c(M). Well-known structure-function relationships of the two branches of heme-copper oxidases, namely cytochrome c (aa(3)-type) oxidase (COX) and quinol (bo-type) oxidase (QOX), formed the base for a critical inspection of genes and ORFs found in cyanobacterial genomes.

Design of a village breeding programme for a llama population in the High Andes of Bolivia.

No national breeding programme for llamas is in place in Bolivia. Initiatives for genetic improvement are rarely found and are usually carried out by NGOs working in rural development or improvement of livestock production or research stations. Farmers in the Province of Ayopaya in the District of Cochabamba have formed a breeders' organization with the aim of improving fibre production.

Determination of humic acids content in composts by means of near- and mid-infrared spectroscopy and partial least squares regression models.

Humic acids are part of the stable organic matter fraction in soils and composts. Due to their favorable properties for soils and plants, and their role in carbon sequestration, they are considered a quality criterion of composts. Time-consuming chemical extraction of humic acids and the inherent source of errors require alternative approaches for humic acids quantification.

Impact of different cultivation and induction regimes on the structure of cytosolic inclusion bodies of TEM1-beta-lactamase.

The enzyme TEM1-beta-lactamase has been used as a model to study the impact of different cultivation and induction regimes on the structure of cytosolic inclusion bodies (IBs). The protein has been heterologously expressed in Escherichia coli in fed-batch cultivations at different temperatures (30, 37, and 40 degrees C) as well as induction regimes that guaranteed distinct product formation rates and ratios of soluble to aggregated protein. Additionally, shake flask cultivations at 20, 30, and 37 degrees C were performed.

Genetic and morphological characterisation of the Ankole Longhorn cattle in the African Great Lakes region.

The study investigated the population structure, diversity and differentiation of almost all of the ecotypes representing the African Ankole Longhorn cattle breed on the basis of morphometric (shape and size), genotypic and spatial distance data. Twentyone morphometric measurements were used to describe the morphology of 439 individuals from 11 sub-populations located in five countries around the Great Lakes region of central and eastern Africa. Additionally, 472 individuals were genotyped using 15 DNA microsatellites.