Verified hypotheses on the "nurse" and "burial" effects on introduced regeneration in a mesic Scots pine forest.

A previous study on the encroachment of North American northern red oak L. into the mesic Scots pine forest (in central Poland) revealed high abundances of seedlings and saplings under shrubs, with lower abundances in open areas or clumps of bilberry L. It was unclear whether the regeneration success of is enhanced by the presence of shrubs due to their "nurse effect", and how burying acorns of different sizes in soil or moss affects the survival of oak seeds and seedlings (a "burial effect").

Dynamics of standing deadwood in Austrian forests under varying forest management and climatic conditions.

Standing deadwood is an important structural component of forest ecosystems. Its occurrence and dynamics influence both carbon fluxes and the availability of habitats for many species. However, deadwood is greatly reduced in managed, and even in many currently unmanaged temperate forests in Europe.

Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar.

Background: Despite the increasing number of epigenomic studies in plants, little is known about the forces that shape the methylome in long-lived woody perennials. The Lombardy poplar offers an ideal opportunity to investigate the impact of the individual environmental history of trees on the methylome.

Results: We present the results of three interconnected experiments on Lombardy poplar.

Parallel adaptation to lower altitudes is associated with enhanced plasticity in Heliosperma pusillum (Caryophyllaceae).

High levels of phenotypic plasticity are thought to be inherently costly in stable or extreme environments, but enhanced plasticity may evolve as a response to new environments and foster novel phenotypes. Heliosperma pusillum forms glabrous alpine and pubescent montane ecotypes that diverged recurrently and polytopically (parallel evolution) and can serve as evolutionary replicates. The specific alpine and montane localities are characterized by distinct temperature conditions, available moisture, and light.

Biotic threats for 23 major non-native tree species in Europe.

For non-native tree species with an origin outside of Europe a detailed compilation of enemy species including the severity of their attack is lacking up to now. We collected information on native and non-native species attacking non-native trees, i.e.

Sequencing of Complete Chloroplast Genomes.

In this chapter, frequently used methods for elucidating sequence and structure of chloroplast genomes are reviewed, as a current best practice guide. This concerns methods for DNA extraction, sequencing library preparation, and bioinformatics (assembly, verification, annotation, and sequence comparisons). Recommendations for standard data reporting practices are given-chloroplast genome sequencing reports can be highly formalized, and publication in the form of standard data reports is the best option for comparison and meta-analysis purposes.

Why European biodiversity reporting is not reliable.

The Convention on Biological Diversity (CBD) aims to end the loss of biodiversity, which is one of the greatest ecological challenges of our time. The lack of success in biodiversity policy implementation is partly related to gaps in biodiversity monitoring. Our overall objective is to contribute to the preparation of the upcoming post 2020 period by a review of biodiversity indicator choices in European CBD reports and hence in national monitoring systems.

Epigenetic Analysis through MSAP-NGS Coupled Technology: The Case Study of White Poplar Monoclonal Populations/Stands.

Over the last several decades, several lines of evidence have shown that epigenetic modifications modulate phenotype and mediate an organism's response to environmental stimuli. Plant DNA is normally highly methylated, although notable differences exist between species. Many biomolecular techniques based on PCR have been developed to analyse DNA methylation status, however a qualitative leap was made with the advent of next-generation sequencing (NGS).

A Systematic Review of the Impact of Invasive Alien Plants on Forest Regeneration in European Temperate Forests.

Invasive alien species (IAS) are one of the major threats to global and local biodiversity. In forest ecosystems, the threats caused by IAS include hybridization, transmission of diseases and species competition. This review sets out to analyze the impact of alien plant species on forest regeneration, which we consider to be one of the key stages in tree ecology for the survival of forest ecosystems in the future.

Variability in DNA Methylation and Generational Plasticity in the Lombardy Poplar, a Single Genotype Worldwide Distributed Since the Eighteenth Century.

In the absence of genetic diversity, plants rely on the capacity of phenotypic plasticity to cope with shifts in environmental conditions. Understanding the mechanisms behind phenotypic plasticity and how local phenotypic adjustments are transferred to clonal offspring, will provide insight into its ecological and evolutionary significance. Epigenetic changes have recently been proposed to play a crucial role in rapid environmental adaptation.

Epigenetic Diversity of Clonal White Poplar (Populus alba L.) Populations: Could Methylation Support the Success of Vegetative Reproduction Strategy?

The widespread poplar populations of Sardinia are vegetatively propagated and live in different natural environments forming large monoclonal stands. The main goals of the present study were: i) to investigate/measure the epigenetic diversity of the poplar populations by determining their DNA methylation status; ii) to assess if and how methylation status influences population clustering; iii) to shed light on the changes that occur in the epigenome of ramets of the same poplar clone. To these purposes, 83 white poplar trees were sampled at different locations on the island of Sardinia.