266 results match your criteria: "Annual Review Of Animal Biosciences[Journal]"

Comparative Genomics and Epigenomics of Transcriptional Regulation.

Annu Rev Anim Biosci

November 2024

6GABI, AgroParisTech, INRAE, Jouy-en-Josas, France; email:

Article Synopsis
  • Transcriptional regulation is a complex process influenced by various physiological factors, and advancements in whole genome sequencing are enhancing our understanding of this regulation.
  • Newly available comparative genomics and epigenomics data help identify important regulatory variants and noncoding elements affecting gene expression across different tissues and species.
  • Future research should aim to create more diverse epigenomic data from different physiological states, with farm animals being ideal models for these studies, while also leveraging new technologies like deep learning for further insights.
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Lipotoxicity and Oocyte Quality in Mammals: Pathogenesis, Consequences, and Reversibility.

Annu Rev Anim Biosci

November 2024

1Gamete Research Centre, Laboratory of Veterinary Physiology and Biochemistry, Department of Veterinary Sciences, University of Antwerp, Wilrijk, Belgium; email:

Metabolic stress conditions are often characterized by upregulated lipolysis and subsequently increased serum free fatty acid (FFA) concentrations, leading to the uptake of FFAs by non-adipose tissues and impairment of their function. This phenomenon is known as lipotoxicity. The increased serum FFA concentrations are reflected in the ovarian follicular fluid, which can have harmful effects on oocyte development.

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The Rhesus Macaque as an Animal Model for Human Nutrition: An Ecological-Evolutionary Perspective.

Annu Rev Anim Biosci

November 2024

1Centre for Nutritional Ecology, Centre for Sport Nutrition and Health, School of Physical Education (Main Campus), Zhengzhou University, Zhengzhou, Henan, China.

Nutrition is a complex and contested area in biomedicine, which requires diverse evidence sources. Nonhuman primate models are considered an important biomedical research tool because of their biological similarities to humans, but they are typically used with little explicit consideration of their ecology and evolution. Using the rhesus macaque (RM), we consider the potential of nutritional ecology for enriching the use of primates as models for human nutrition.

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Molecular Innovations Shaping Beak Morphology in Birds.

Annu Rev Anim Biosci

November 2024

2Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China; email:

The beak, a pivotal evolutionary trait characterized by high morphological diversity and plasticity, has enabled birds to survive mass extinction events and subsequently radiate into diverse ecological niches worldwide. This remarkable ecological adaptability underscores the importance of uncovering the molecular mechanisms shaping avian beak morphology, particularly benefiting from the rapidly advancing archives of genomics and epigenomics. We review the latest advancements in understanding how genetic and epigenetic innovations control or regulate beak development and drive beak morphological adaptation and diversification over the past two decades.

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The Geometric Framework for Nutrition and Its Application to Rodent Models.

Annu Rev Anim Biosci

November 2024

1Charles Perkins Centre, University of Sydney, Camperdown, New South Wales, Australia; email:

Rodents have been the primary model for mammalian nutritional physiology for decades. Despite an extensive body of literature, controversies remain around the effects of specific nutrients and total energy intake on several aspects of nutritional biology, even in this well-studied model. One approach that is helping to bring clarity to the field is the geometric framework for nutrition (GFN).

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A Passion for Small Things and Staying Primed: My Career in Virology and Immunology.

Annu Rev Anim Biosci

November 2024

Center for Food Animal Health, Animal Sciences Department, Ohio Agricultural Research and Development Center, College of Food, Agriculture and Environmental Sciences, and Veterinary Preventive Medicine Department, College of Veterinary Medicine, The Ohio State University, Wooster, Ohio, USA; email:

A love of science and animals, perseverance, and happenstance propelled my career in veterinary virology and immunology. I have focused on deadly enteric and respiratory viral infections in neonatal livestock and humans with an aim to understand their prevalence, pathogenesis, interspecies transmission, and immunity and develop vaccines. Research on animal coronaviruses (CoVs), including their broad interspecies transmission, provided a foundation to understand emerging zoonotic fatal human respiratory CoVs [severe acute respiratory syndrome, Middle East respiratory syndrome, severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2)] and reverse zoonosis of SARS-CoV-2 to animals.

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Convergent Evolution of Pregnancy in Vertebrates.

Annu Rev Anim Biosci

November 2024

2School of Earth, Atmospheric and Life Sciences, The University of Wollongong, Wollongong, New South Wales, Australia; email:

Viviparity (live birth) represents a significant evolutionary innovation that has emerged in hundreds of lineages of invertebrate and vertebrate animals. The evolution of this trait from the ancestral state of egg laying has involved complex morphological, behavioral, physiological, and genetic changes, which enable internal development of embryos within the female reproductive tract. Comparable changes have also occurred in oviparous, brooding species that carry developing embryos in locations other than the female reproductive tract.

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Achieving net-zero greenhouse gas (GHG) emissions in dairy production will require >50% reduction in enteric methane (CH) emissions together with elimination of emissions from feed production, additional carbon sequestration, reduction in manure emissions, anaerobic digestion of manure, and decreased reliance on fossil fuel energy. Over past decades, improved production efficiency has reduced GHG intensity of milk production (i.e.

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Challenges in livestock production in developing countries are often linked to a high disease prevalence and may be related to poor husbandry, feeding, and nutrition practices, as well as to inadequate access to preventive veterinary care. Structural barriers including chronic poverty, gender roles, inadequate supply chains, and limitations in surveillance infrastructure further complicate progress. Despite many challenges, the livestock sector substantially contributes to agricultural GDP, and reducing livestock disease prevalence is a goal for many countries.

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Second-generation biofuel production, which aims to convert lignocellulose to liquid transportation fuels, could be transformative in worldwide energy portfolios. A bottleneck impeding its large-scale deployment is conversion of the target polysaccharides in lignocellulose to their unit sugars for microbial fermentation to the desired fuels. Cellulose and hemicellulose, the two major polysaccharides in lignocellulose, are complex in nature, and their interactions with pectin and lignin further increase their recalcitrance to depolymerization.

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Chromosome Engineering: Technologies, Applications, and Challenges.

Annu Rev Anim Biosci

November 2024

1State Key Laboratory of Stem Cell and Reproductive Biology, Institute of Zoology and Key Laboratory of Organ Regeneration and Reconstruction, Chinese Academy of Sciences, Beijing, China; email:

Chromosome engineering is a transformative field at the cutting edge of biological science, offering unprecedented precision in manipulating large-scale genomic DNA within cells. This discipline is central to deciphering how the multifaceted roles of chromosomes-guarding genetic information, encoding sequence positional information, and influencing organismal traits-shape the genetic blueprint of life. This review comprehensively examines the technological advancements in chromosome engineering, which center on engineering chromosomal rearrangements, generating artificial chromosomes, de novo synthesizing chromosomes, and transferring chromosomes.

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Ruminating on Bovine Implantation: Its Importance in Fertility, Food Production, Conservation, and Health.

Annu Rev Anim Biosci

November 2024

Discovery and Translational Sciences Department, Leeds Institute of Cardiovascular and Metabolic Medicine, School of Medicine, University of Leeds, Leeds, United Kingdom; email:

Article Synopsis
  • Implantation in cattle is crucial for successful pregnancies and involves complex changes in the endometrium's transcriptional landscape.
  • Factors affecting implantation include embryo development, assisted reproductive technologies, and environmental conditions, showing different processes compared to other placental mammals.
  • Current knowledge gaps exist regarding the mechanisms of implantation and how various stressors influence it, but advancements in 3D modeling and data analysis may enhance our understanding and improve implantation outcomes.
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Evolution of 3D Chromatin Folding.

Annu Rev Anim Biosci

November 2024

Genome Integrity and Instability Group, Institut de Biotecnologia i Biomedicina and Departament de Biologia Cel.lular, Fisiologia i Immunologia, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain; email:

Studies examining the evolution of genomes have focused mainly on sequence conservation. However, the inner working of a cell implies tightly regulated crosstalk between complex gene networks controlled by small dispersed regulatory elements of physically contacting DNA regions. How these different levels of chromatin organization crosstalk in different species underpins the potential for genome evolutionary plasticity.

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Article Synopsis
  • Human reproductive and metabolic health has declined over the last 50 years due to exposure to a mix of environmental chemicals, leading to issues like poor sperm quality, early puberty, and increased obesity.
  • The impact of these chemicals is particularly strong during embryo and fetus development, with animal studies showing effects from both single chemicals and mixtures.
  • Future research should focus on the effects of complex chemical mixtures across multiple developmental stages to better understand genetic mechanisms and develop strategies for reducing these health risks.
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The northern white rhinoceros (NWR) is functionally extinct, with only two nonreproductive females remaining. However, because of the foresight of scientists, cryopreserved cells and reproductive tissues may aid in the recovery of this species. An ambitious program of natural and artificial gamete and in vitro embryo generation was first outlined in 2015, and many of the proposed steps have been achieved.

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Parasites in a Changing World: Troublesome or in Trouble?

Annu Rev Anim Biosci

November 2024

School of Aquatic and Fishery Sciences, University of Washington, Seattle, Washington, USA; email:

There are plenty of reasons to believe that parasite populations will respond to biodiversity loss, warming, pollution, and other forms of global change. But will global change enhance transmission, increasing the incidence of troublesome parasites that put people, livestock, and wildlife at risk? Or will parasite populations decline in abundance-or even become extinct-suggesting trouble on the horizon for parasite biodiversity? Here, I explain why answers have thus far eluded us and suggest new lines of research that would advance the field. Data collected to date suggest that parasites can respond to global change with increases or decreases in abundance, depending on the driver and the parasite.

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Integrated Genomic Approaches to Characterize and Mitigate Heat Stress in Poultry.

Annu Rev Anim Biosci

October 2024

2Department of Animal Science, Iowa State University, Ames, Iowa, USA; email:

With the burgeoning human population, climate change, and expansion of poultry production in hot climates, it is imperative to aid global food security by enhancing the resilience of thermally challenged poultry. As a complement to management approaches used to mitigate heat stress, we give selected examples of recent studies on heat stress in poultry using various omics technologies. An integrated analysis of positional and functional candidate genes is provided, highlighting the most prominent pathways involved in the heat stress response.

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Porcine cancer models offer a valuable platform for evaluating interventions such as devices, surgeries, and locoregional therapies, which are often challenging to test in mouse models. In addition to size and anatomical similarities with humans, pigs share greater similarities in genetics, immunity, drug metabolism, and metabolic rate with humans as compared to mouse models, increasing their translational relevance. This review focuses on the Oncopig Cancer Model, a genetically engineered porcine model designed to recapitulate human cancer.

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An Evolutionary Perspective on Dog Behavioral Genetics.

Annu Rev Anim Biosci

October 2024

1Genomics and Computational Biology, University of Massachusetts Chan Medical School, Worcester, Massachusetts, USA.

Dogs have played an outsized role in the field of behavioral genetics since its earliest days. Their unique evolutionary history and ubiquity in the modern world make them a potentially powerful model system for discovering how genetic changes lead to changes in behavior. Genomic technology has supercharged this potential by enabling scientists to sequence the DNA of thousands of dogs and test for correlations with behavioral traits.

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No More Extinctions: Recovering Australia's Biodiversity.

Annu Rev Anim Biosci

October 2024

1Research Institute for the Environment and Livelihoods, Charles Darwin University, Casuarina, Northern Territory, Australia; email:

Most conservation programs and laws aim to prevent extinction. However, there is a gulf between such aspirations and the current reality of escalating biodiversity loss. This review focuses on efforts to prevent extinctions in Australia, but much of this consideration is likely to apply globally.

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Improving Nutrition Security in Low- and Middle-Income Countries and the Role of Animal-Source Foods.

Annu Rev Anim Biosci

September 2024

1Department of Environmental and Global Health, College of Public Health and Health Professions, University of Florida, Gainesville, Florida, USA; email:

Nutrition security is challenging in regions where resources are limited and food production is naturally constrained. In low- and middle-income countries (LMICs), undernutrition is high for many reasons, including lack of nutritional diversity and low high-quality protein content. Interest in the role of animal-source food (ASF) in reducing nutrition insecurity is increasing, as evidence from LMICs suggests that consumption of ASF is strongly associated with reduction in stunting, improved diet quality, and overall nutrition, particularly in early stages of life.

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Pregnancy Establishment and Diagnosis in Livestock.

Annu Rev Anim Biosci

August 2024

5Department of Animal Science, College of Agriculture and Life Sciences, Cornell University, Ithaca, New York, USA; email:

Article Synopsis
  • The review examines reproduction and pregnancy processes in various livestock species, including cattle, sheep, goats, swine, horses, and camelids.
  • It offers a historical perspective on pregnancy detection, while also delving into the physiological aspects of pregnancy and the significance of conceptus signals for accurate diagnosis.
  • The paper highlights the importance of effective pregnancy diagnosis and management to enhance the profitability of livestock operations and discusses emerging diagnostic methods.
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Future of Immune Modulation in Animal Agriculture.

Annu Rev Anim Biosci

August 2024

3National Animal Disease Center, Agricultural Research Service, USDA, Ames, Iowa, USA.

Immune modulation in animal agriculture has been of research interest for several decades, yet only a few immunomodulators have received regulatory approval in the United States and around the world. In this review, we summarize market and regulatory environments impacting commercial development of immunomodulators for use in livestock and poultry. In the United States, very few immunomodulators have received regulatory approval for use in livestock by either the US Department of Agriculture Center for Veterinary Biologics or the Food and Drug Administration (FDA).

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Advances in Managing Chytridiomycosis for Australian Frogs: .

Annu Rev Anim Biosci

February 2024

One Health Research Group, Melbourne Veterinary School, Faculty of Science, University of Melbourne, Werribee, Victoria, Australia; email:

Extensive knowledge gains from research worldwide over the 25 years since the discovery of chytridiomycosis can be used for improved management. Strategies that have saved populations in the short term and/or enabled recovery include captive breeding, translocation into disease refugia, translocation from resistant populations, disease-free exclosures, and preservation of disease refuges with connectivity to previous habitat, while antifungal treatments have reduced mortality rates in the wild. Increasing host resistance is the goal of many strategies under development, including vaccination and targeted genetic interventions.

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Advocating for Generalizability: Accepting Inherent Variability in Translation of Animal Research Outcomes.

Annu Rev Anim Biosci

February 2024

B2 Pathology Solutions LLC, Cary, North Carolina, USA; email:

Advancing scientific discovery requires investigators to embrace research practices that increase transparency and disclosure about materials, methods, and outcomes. Several research advocacy and funding organizations have produced guidelines and recommended practices to enhance reproducibility through detailed and rigorous research approaches; however, confusion around vocabulary terms and a lack of adoption of suggested practices have stymied successful implementation. Although reproducibility of research findings cannot be guaranteed due to extensive inherent variables in attempts at experimental repetition, the scientific community can advocate for generalizability in the application of data outcomes to ensure a broad and effective impact on the comparison of animals to translation within human research.

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