72 results match your criteria: "Andalusian Center for Developmental Biology[Affiliation]"

At the end of cell division, the nuclear envelope reassembles around the decondensing chromosomes. Female meiosis culminates in two consecutive cell divisions of the oocyte, meiosis I and II, which are separated by a brief transition phase known as interkinesis. Due to the absence of chromosome decondensation and the suppression of genome replication during interkinesis, it has been widely assumed that the nuclear envelope does not reassemble between meiosis I and II.

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Biological warfare between two bacterial viruses in a defense archipelago sheds light on the spread of CRISPR-Cas systems.

Cell Rep

December 2024

Andalusian Center for Developmental Biology (CABD, UPO-CSIC-JA), Faculty of Experimental Sciences (Genetics Area), University Pablo de Olavide, 41013 Seville, Spain. Electronic address:

CRISPR-Cas systems are adaptive immunity systems of bacteria and archaea that prevent infection by viruses and other external mobile genetic elements. It is currently known that these defense systems can be co-opted by the same viruses. We have found one of these viruses in the opportunistic pathogen Acinetobacter baumannii, and the same system has been also found in an integration hotspot of the bacterial genome that harbors other multiple defense systems.

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The capacity to regenerate lost organs is widespread among animals, and yet the number of species in which regeneration has been experimentally probed using molecular and functional assays is very small. This is also the case for insects, for which we still lack a complete picture of their regeneration mechanisms and the extent of their conservation. Here, we contribute to filling this gap by investigating regeneration in the mayfly .

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Multiple allelic configurations govern long-range Shh enhancer-promoter communication in the embryonic forebrain.

Mol Cell

December 2024

Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA; Penn Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. Electronic address:

Article Synopsis
  • Developmental gene regulation relies on long-range communication between enhancers and promoters, which is not fully understood without considering the surrounding chromatin.
  • Researchers studied the Sonic hedgehog (Shh) regulatory region in mouse brains to understand its structural configurations, discovering that it often maintains a compact form that can adopt various layouts regardless of Shh expression.
  • They found that long-range enhancer-promoter interactions occur through both dependent and independent mechanisms of Shh expression, involving specific binding sites and active enhancers, leading to a proposed model that coordinates gene expression patterns.
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Article Synopsis
  • At the end of cell division, the nuclear envelope reforms around chromosomes, and female meiosis involves two cell divisions (meiosis I and II) separated by a phase called interkinesis.
  • Previous assumptions held that the nuclear envelope doesn't reassemble during interkinesis due to the lack of chromosome decondensation and genome replication.
  • Research findings reveal a unique structure called the interkinetic envelope, which surrounds segregating chromosomes during interkinesis and has distinct properties compared to the nuclear envelope.
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  • CRISPR-Cas13 systems are popular in research but face challenges due to unintended effects in mammalian cells and the need for improved efficiency.
  • This study optimized targeting in zebrafish by using modified gRNAs and refining nuclear RNA-targeting methods, achieving effective depletion of specific mRNAs with minimal side effects.
  • The research also explored alternative CRISPR-Cas systems that reduce collateral activity, contributing to better RNA targeting strategies and broader applications of CRISPR technology.
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Article Synopsis
  • - X-linked acrogigantism (X-LAG) is a serious genetic condition caused by duplications on chromosome X that affect the GPR101 gene, leading to excessive growth due to misexpression of this gene in the pituitary gland.
  • - The researchers used advanced genomic techniques, specifically 4C/HiC-seq, to examine the impact of GPR101 duplications on the functional structure of the genome in families with these duplications, finding that some did not create harmful changes.
  • - The study emphasizes the significance of chromatin interactions and boundaries in understanding genetic disorders and demonstrates the utility of 4C/HiC-seq in genetic counseling and clinical decision-making for suspected TADopathies.
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A stem cell activation state coupling spermatogenesis with social interactions in Drosophila males.

Cell Rep

August 2024

Andalusian Center for Developmental Biology (CABD), CSIC, UPO, Junta de Andalucía, Carretera de Utrera km 1, 41013 Sevilla, Spain. Electronic address:

Reproduction is paramount to animals. For it to be successful, a coordination of social behavior, physiology, and gamete production is necessary. How are social cues perceived and how do they affect physiology and gametogenesis? While females, ranging from insects to mammals, have provided multiple insights about this coordination, its existence remains largely unknown in males.

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Article Synopsis
  • Protein language models have shown strong results on curated datasets, but their application to entire proteomes is still untested.
  • In our study, we compared two machine learning methods for decoding functional information in model organism proteomes and found that protein language models outperformed deep learning methods in precision and informativeness.
  • Our findings suggest that protein language models could be highly effective for large-scale protein annotation and further analytical tasks, leading us to recommend a guide for their implementation.
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Effect of diet on the evolution of gut commensal bacteria.

Gut Microbes

June 2024

Instituto Gulbenkian de Ciência, Oeiras, Portugal.

The gut microbiota, comprising trillions of diverse microorganisms inhabiting the intestines of animals, forms a complex and indispensable ecosystem with profound implications for the host's well-being. Its functions include contributing to developing the host's immune response, aiding in nutrient digestion, synthesizing essential compounds, acting as a barrier against pathogen invasion, and influencing the development or regression of various pathologies. The dietary habits of the host directly impact this intricate community of gut microbes.

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The Maternal-to-Zygotic transition (MZT) is a reprograming process encompassing zygotic genome activation (ZGA) and the clearance of maternally-provided mRNAs. While some factors regulating MZT have been identified, there are thousands of maternal RNAs whose function has not been ascribed yet. Here, we have performed a proof-of-principle CRISPR-RfxCas13d maternal screening targeting mRNAs encoding protein kinases and phosphatases in zebrafish and identified Bckdk as a novel post-translational regulator of MZT.

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During mouse development, presomitic mesoderm cells synchronize Wnt and Notch oscillations, creating sequential phase waves that pattern somites. Traditional somitogenesis models attribute phase waves to a global modulation of the oscillation frequency. However, increasing evidence suggests that they could arise in a self-organizing manner.

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The Wnt pathway is essential for inducing the primitive streak, the precursor of the mesendoderm, as well as setting anterior-posterior coordinates. How Wnt coordinates these diverse activities remains incompletely understood. Here, we show that in Wnt-treated human pluripotent cells, endogenous Nodal signaling is a crucial switch between posteriorizing and primitive streak-including activities.

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Case report: Management of pediatric gigantism caused by the TADopathy, X-linked acrogigantism.

Front Endocrinol (Lausanne)

March 2024

Department of Endocrinology, Centre Hospitalier Universitaire de Liège, University of Liège, Liège, Belgium.

Article Synopsis
  • * The duplication modifies the normal gene arrangement, leading to increased hormone production and causing gigantism due to a new regulatory domain (neo-TAD) that disrupts typical genetic control.
  • * The case study of a female patient highlights the challenges in diagnosing and treating X-LAG, showcasing the use of advanced medical techniques and surgical interventions to achieve hormone regulation in affected children.
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Vanishing white matter (VWM) is a fatal leukodystrophy caused by recessive mutations in subunits of the eukaryotic translation initiation factor 2B. Currently, there are no effective therapies for VWM. Here, we assessed the potential of adenine base editing to correct human pathogenic VWM variants in mouse models.

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In this study, the authors compared the efficiency of automated robotic and manual injection methods for the CRISPR-RfxCas13d (CasRx) system for mRNA knockdown and Cas9-mediated DNA targeting in zebrafish embryos. They targeted the no tail () gene as a proof-of-principle, evaluating the induced embryonic phenotypes. Both Cas9 and CasRx systems caused loss of function phenotypes for .

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To meet the physiological demands of the body, organs need to establish a functional tissue architecture and adequate size as the embryo develops to adulthood. In the liver, uni- and bipotent progenitor differentiation into hepatocytes and biliary epithelial cells (BECs), and their relative proportions, comprise the functional architecture. Yet, the contribution of individual liver progenitors at the organ level to both fates, and their specific proportion, is unresolved.

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The nuclear envelope, which protects and organizes the genome, is dismantled during mitosis. In the zygote, nuclear envelope breakdown (NEBD) of the parental pronuclei is spatially and temporally regulated during mitosis to promote the unification of the maternal and paternal genomes. Nuclear pore complex (NPC) disassembly is a decisive step of NEBD, essential for nuclear permeabilization.

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Nucleoporins (Nups) assemble nuclear pores that form the permeability barrier between nucleoplasm and cytoplasm. Nucleoporins also localize in cytoplasmic foci proposed to function as pore pre-assembly intermediates. Here, we characterize the composition and incidence of cytoplasmic Nup foci in an intact animal, C.

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Article Synopsis
  • * Researchers used x-ray crystallography along with various experimental methods to examine how these mutations, particularly at the dimer interface of the AR ligand-binding domain (AR-LBD), affected AR function.
  • * The study found that specific mutations trigger an allosteric switch in AR-LBD, which enhances the exposure of a key methylation site and impacts AR dimerization and function, suggesting new avenues for precision medicine in treating related diseases.
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The glucocorticoid receptor (GR) is a ubiquitously expressed transcription factor that controls metabolic and homeostatic processes essential for life. Although numerous crystal structures of the GR ligand-binding domain (GR-LBD) have been reported, the functional oligomeric state of the full-length receptor, which is essential for its transcriptional activity, remains disputed. Here we present five new crystal structures of agonist-bound GR-LBD, along with a thorough analysis of previous structural work.

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Sudden cardiac death (SCD) in patients with heart failure (HF) is allied with an imbalance in reduction and oxidation (redox) signaling in cardiomyocytes; however, the basic pathways and mechanisms governing redox homeostasis in cardiomyocytes are not fully understood. Here, we show that cytochrome b5 reductase 3 (CYB5R3), an enzyme known to regulate redox signaling in erythrocytes and vascular cells, is essential for cardiomyocyte function. Using a conditional cardiomyocyte-specific CYB5R3-knockout mouse, we discovered that deletion of CYB5R3 in male, but not female, adult cardiomyocytes causes cardiac hypertrophy, bradycardia, and SCD.

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The requirement for Cas nucleases to recognize a specific PAM is a major restriction for genome editing. SpCas9 variants SpG and SpRY, recognizing NGN and NRN PAMs, respectively, have contributed to increase the number of editable genomic sites in cell cultures and plants. However, their use has not been demonstrated in animals.

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Nuclear pore complexes (NPCs) are essential to communication of macromolecules between the cell nucleus and the surrounding cytoplasm. RNA synthesized in the nucleus is exported through NPCs to function in the cytoplasm, whereas transcription factors and other proteins are selectively and actively imported. In addition, many NPC constituents, known as nuclear pore proteins (nucleoporins or nups), also play critical roles in other processes, such as genome organization, gene expression, and kinetochore function.

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