637 results match your criteria: "Aichi 464-8602 Japan; Institute for Molecular Science[Affiliation]"

During the double fertilization process, pollen tubes deliver two sperm cells to an ovule containing the female gametes. In the pollen tube, the vegetative nucleus and sperm cells move together to the apical region where the vegetative nucleus is thought to play a crucial role in controlling the direction and growth of the pollen tube. Here, we report the generation of pollen tubes in Arabidopsis thaliana whose vegetative nucleus and sperm cells are isolated and sealed by callose plugs in the basal region due to apical transport defects induced by mutations in the WPP domain-interacting tail-anchored proteins (WITs) and sperm cell-specific expression of a dominant mutant of the CALLOSE SYNTHASE 3 protein.

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Fast and wide field-of-view imaging with single-cell resolution, high signal-to-noise ratio, and no optical aberrations have the potential to inspire new avenues of investigations in biology. However, such imaging is challenging because of the inevitable tradeoffs among these parameters. Here, we overcome these tradeoffs by combining a resonant scanning system, a large objective with low magnification and high numerical aperture, and highly sensitive large-aperture photodetectors.

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The exploration of composition-structure-function relationship in proton-conducting solids remains a challenge in materials chemistry. Polyoxometalate-based compounds have been long considered as candidates for proton conductors; however, their low structural stability and a large decrease in conductivity under reduced relative humidity (RH) have limited their applications. To overcome such limitations, the hybridization of polyoxometalates with proton-conducting polymers has emerged as a promising method.

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Time-resolved photoelectron imaging of complex resonances in molecular nitrogen.

J Chem Phys

April 2021

Elettra-Sincrotrone Trieste, SS 14, km 163.5, in Area Science Park, 34149 Basovizza, Trieste, Italy.

Article Synopsis
  • * Our experiments revealed time-dependent oscillations in photoelectron yields and angular distributions, enhancing our understanding of interactions among intermediate resonant states.
  • * We identified distinct quantum pathways within nine resonances by analyzing individual photoelectron final states and their angular behavior, noting that exponential decay in photoelectron yield varies based on the final ionic state.
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Molecular and neural mechanisms regulating sexual motivation of virgin female Drosophila.

Cell Mol Life Sci

May 2021

Graduate School of Science, Nagoya University, Nagoya, Aichi, 464-8602, Japan.

During courtship, multiple information sources are integrated in the brain to reach a final decision, i.e., whether or not to mate.

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Variety of Nucleotide Polymerase Mutants Aiming to Synthesize Modified RNA.

Chembiochem

July 2021

Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8602, Japan.

Significant efforts have been made to develop therapeutic RNA aptamers that exploit synthetic RNA to capture target molecules. However, ensuring RNA aptamers are resistant against intrinsic nucleases remains an issue and restricts their use as therapeutics. Introduction of chemical modifications to the 2' sugar moiety of RNA improves their stability effectively and can be achieved by chemical synthesis using modified phosphoramidites; however, this approach is not suitable for preparing long RNA molecules.

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NMR-Guided Repositioning of Non-Steroidal Anti-Inflammatory Drugs into Tight Junction Modulators.

Int J Mol Sci

March 2021

Laboratory of Structural and Molecular Pharmacology, Graduate School of Pharmaceutical Sciences, Nagoya University, Nagoya 464-8601, Aichi, Japan.

Bioavailability is a major bottleneck in the clinical application of medium molecular weight therapeutics, including protein and peptide drugs. Paracellular transport of these molecules is hampered by intercellular tight junction (TJ) complexes. Therefore, safe chemical regulators for TJ loosening are desired.

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We report on a search for nuclear recoil signals from solar ^{8}B neutrinos elastically scattering off xenon nuclei in XENON1T data, lowering the energy threshold from 2.6 to 1.6  keV.

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We investigate the liquid, gas, and supercritical fluid phases of a Lennard-Jones 12-6 potential system by a two-dimensional replica-exchange method in which not only temperature but also chemical potential is exchanged. The method is referred to as the grand canonical replica-exchange method (GCREM). While one-dimensional replica exchange, which exchanges only temperature, cannot cross first-order phase transition points, GCREM can avoid this problem by making a detour in the two-dimensional parameter space.

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Genetic transformation is crucial for both investigating gene functions and for engineering of crops to introduce new traits. Rice ( L.) is an important model in plant research, since it is the staple food for more than half of the world's population.

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Twinfilin is a conserved actin regulator that interacts with actin capping protein (CP) via C terminus residues (TWtail) that exhibits sequence similarity with the CP interaction (CPI) motif of CARMIL. Here we report the crystal structure of TWtail in complex with CP. Our structure showed that although TWtail and CARMIL CPI bind CP to an overlapping surface via their middle regions, they exhibit different CP-binding modes at both termini.

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ClearSeeAlpha: Advanced Optical Clearing for Whole-Plant Imaging.

Plant Cell Physiol

November 2021

Institute of Transformative Bio-Molecules (ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601 Japan.

To understand how the body of plants is made, it is essential to observe the morphology, structure and arrangement of constituent cells. However, the opaque nature of the plant body makes it difficult to observe the internal structures directly under a microscope. To overcome this problem, we developed a reagent, ClearSee, that makes plants transparent, allowing direct observation of the inside of a plant body without inflicting damage on it, e.

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Dynamic Assembly/Disassembly of FtsZ Visualized by High-Speed Atomic Force Microscopy.

Int J Mol Sci

February 2021

Department of Biotechnology, College of Life Sciences, Ritsumeikan University, 1-1-1 Noji-higashi, Kusatsu, Shiga 525-8577, Japan.

FtsZ is a key protein in bacterial cell division and is assembled into filamentous architectures. FtsZ filaments are thought to regulate bacterial cell division and have been investigated using many types of imaging techniques such as atomic force microscopy (AFM), but the time scale of the method was too long to trace the filament formation process. Development of high-speed AFM enables us to achieve sub-second time resolution and visualize the formation and dissociation process of FtsZ filaments.

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Article Synopsis
  • The study estimates the residual entropy of Ice Ih using a new simulation method that combines the replica-exchange Wang-Landau algorithm with the multicanonical replica-exchange technique.
  • It employs a nearest neighbor interaction model on a three-dimensional hexagonal lattice, which adheres to the ice rules.
  • The findings align with past results and highlight the significance of having a uniform random number generator for accuracy in Monte Carlo simulations.
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PGR3 is a P-class pentatricopeptide repeat (PPR) protein required for the stabilization of petL operon RNA and the translation of the petL gene in plastids. Irrespective of its important roles in plastids, key questions have remained unanswered, including how PGR3 protein promotes translation and which plastid mRNA PGR3 activates the translation. Here, we show that PGR3 facilitates the translation from ndhG, in addition to petL, through binding to their 5' untranslated regions (UTRs).

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The fluorescence quantum yield for fluorescent organic molecules is an important molecular property, and tuning it up is desired for various applications. For the computational estimation of the fluorescence quantum yield, the theoretical prediction of the nonradiative decay rate constant has become an attractive subject of study. The rate constant of thermally activated nonradiative decay is related to the activation energy in the photoreaction; thus, the accuracy and reliability of the excited-state potential energies in the quantum chemical computation are critical.

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Squeezing bubbles and impurities out of interlayer spaces by applying force through a few-layer graphene capping layer leads to van der Waals heterostructures with the ultraflat structure free from random electrostatic potential arising from charged impurities. Without the graphene capping layer, a squeezing process with an AFM tip induces applied-force-dependent charges of Δ ∼ 2 × 10 cm μN, resulting in the significant intensity of trions in photoluminescence spectra of MoSe at low temperature. We found that a hBN/MoSe/hBN prepared with the "graphene-capping-assisted AFM nano-squeezing method" shows a strong excitonic emission with negligible trion peak, and the residual line width of the exciton peak is only 2.

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Although techniques to produce uniformly sized hydrogel microspheres (microgels) by aqueous free-radical precipitation polymerization are well established, the details of the polymerization process remain mysterious. In the present study, the structural evolution and thermoresponsiveness of the developing microgels during the polymerization were evaluated by temperature-controlled high-speed atomic force microscopy. This analysis clarified that the swelling properties of the precursor microgels formed in the early stages of the polymerization are quite low due to the high incorporation of cross-linkers and that non-thermoresponsive deca-nanosized spherical domains are already present in the precursor microgels.

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Recent studies have revealed that van der Waals (vdW) heteroepitaxial growth of 2D materials on crystalline substrates, such as hexagonal boron nitride (hBN), leads to the formation of self-aligned grains, which results in defect-free stitching between the grains. However, how the weak vdW interaction causes a strong limitation on the crystal orientation of grains is still not understood yet. In this work, we have focused on investigating the microscopic mechanism of the self-alignment of MoS grains in vdW epitaxial growth on hBN.

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Reversible structural transformation and redox properties of Cr-loaded iron oxide dendrites studied by XANES spectroscopy.

Phys Chem Chem Phys

December 2020

Department of Chemistry, Graduate School of Science & Institute for Advanced Science & Integrated Research Consortium on Chemical Science (IRCCS) & the R-ing (Reaction Infography) World Research Unit (B-1), Nagoya University, Furo-cho, Chikusa, Nagoya, Aichi 464-8602, Japan.

Cr-Loaded iron oxide with a dendritic crystalline structure was synthesized and the reversible crystalline phase transition during redox cycling of the iron oxide was investigated. X-ray diffraction and transmission electron microscopy analyses revealed that Cr was well dispersed and loaded in the iron oxide dendrite crystals, whose lattice constant was dependent on the Cr loading. Temperature-programmed oxidation and reduction experiments revealed the reversible redox properties of the Cr-loaded iron oxide dendrites, whose redox temperature was found to be lower than that of Cr-free iron oxide dendrites.

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Mitochondrial dynamics and segregation during the asymmetric division of zygotes.

Quant Plant Biol

November 2020

Institute of Transformative Bio-Molecules (ITbM), Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601, Japan.

The zygote is the first cell of a multicellular organism. In most angiosperms, the zygote divides asymmetrically to produce an embryo-precursor apical cell and a supporting basal cell. Zygotic division should properly segregate symbiotic organelles, because they cannot be synthesized .

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Capturing roaming molecular fragments in real time.

Science

November 2020

Centre Énergie Matériaux Télécommunications, Institut National de la Recherche Scientifique, Varennes, Quebec J3X 1S2, Canada.

Since the discovery of roaming as an alternative molecular dissociation pathway in formaldehyde (HCO), it has been indirectly observed in numerous molecules. The phenomenon describes a frustrated dissociation with fragments roaming at relatively large interatomic distances rather than following conventional transition-state dissociation; incipient radicals from the parent molecule self-react to form molecular products. Roaming has been identified spectroscopically through static product channel-resolved measurements, but not in real-time observations of the roaming fragment itself.

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Acquired immunodeficiency syndrome (AIDS) is caused by infection with the human immunodeficiency virus (HIV). Although treatments against HIV infection are available, AIDS remains a serious disease that causes many deaths annually. Although a variety of anti-HIV drugs have been synthesized and marketed to treat HIV-infected patients, nucleoside analogue reverse transcriptase inhibitors (NRTIs), which mimic nucleosides, are used extensively and remain a subject of interest to medicinal chemists.

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Polarization consistent basis sets using the projector augmented wave method: a renovation brought by PAW into Gaussian basis sets.

Phys Chem Chem Phys

December 2020

Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602, Japan.

A recently introduced framework incorporating the Projector Augmented Wave method and Gauss-type function (GTF-PAW) [X.-G. Xiong and T.

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