253 results match your criteria: "African institute for Mathematical Sciences[Affiliation]"

Since the beginning of 2023, the number of people with suspected monkeypox virus (MPXV) infection have sharply increased in the Democratic Republic of the Congo (DRC). We report near-to-complete MPXV genome sequences derived from six cases from the South Kivu province. Phylogenetic analyses reveal that the MPXV affecting the cases belongs to a novel Clade I sub-lineage.

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Introduction: The onset of the COVID-19 pandemic has placed a significant burden on healthcare systems worldwide, particularly in sub-Saharan regions where healthcare resources are limited. The transmission of SARS-CoV-2 is facilitated by the movement of people from place to place. Therefore, implementing measures that restrict movement of people and contacts is crucial in controlling the spread of the disease.

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Article Synopsis
  • The Gini index is used to measure the inequality of leaf and fruit sizes in plants, employing the Lorenz curve to illustrate their cumulative distribution.
  • Previous research has mainly focused on two performance equations, PE-1 and GPE-1, that model these Lorenz curves, while a potential alternative, PE-2, has not been thoroughly analyzed.
  • The current study compares four performance equations, including generalized versions, and finds GPE-1 to have the best fit for the data, while PE-2 displays a better linear behavior, aiding in the assessment of plant organ size distribution inequality.
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The fundamental goal of this research is to suggest a novel mathematical operator for modeling visceral leishmaniasis, specifically the Caputo fractional-order derivative. By utilizing the Fractional Euler Method, we were able to simulate the dynamics of the fractional visceral leishmaniasis model, evaluate the stability of the equilibrium point, and devise a treatment strategy for the disease. The endemic and disease-free equilibrium points are studied as symmetrical components of the proposed dynamical model, together with their stabilities.

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A mathematical model for malaria disease dynamics with vaccination and infected immigrants.

Math Biosci Eng

January 2024

Department of Mathematics and Applied Mathematics, University of the Western Cape, Private Bag X17, Bellville 7535, Republic of South Africa.

The world is aiming to eliminate malaria by 2030. The introduction of the pilot project on malaria vaccination for children in Kenya, Ghana, and Malawi presents a significant thrust to the elimination efforts. In this work, a susceptible, infectious and recovered (SIR) human-vector interaction mathematical model for malaria was formulated.

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The urgent need for effective wildlife monitoring solutions in the face of global biodiversity loss has resulted in the emergence of conservation technologies such as passive acoustic monitoring (PAM). While PAM has been extensively used for marine mammals, birds, and bats, its application to primates is limited. Black-and-white ruffed lemurs (Varecia variegata) are a promising species to test PAM with due to their distinctive and loud roar-shrieks.

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Adaptive rewiring shapes structure and stability in a three-guild herbivore-plant-pollinator network.

Commun Biol

January 2024

Centre for Invasion Biology, Department of Mathematical Sciences, Stellenbosch University, Stellenbosch, 7602, South Africa.

Animal species, encompassing both pollinators and herbivores, exhibit a preference for plants based on optimal foraging theory. Understanding the intricacies of these adaptive plant-animal interactions in the context of community assembly poses a main challenge in ecology. This study delves into the impact of adaptive interaction rewiring between species belonging to different guilds on the structure and stability of a 3-guild ecological network, incorporating both mutualistic and antagonistic interactions.

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Evidence That Field Muskmelon ( L. var. Naud.) Fruits Are Solids of Revolution.

Plants (Basel)

December 2023

Bamboo Research Institute, College of Ecology and Environment, Nanjing Forestry University, #159 Longpan Road, Nanjing 210037, China.

In nature, the fruit shapes of many plants resemble avian eggs, a form extensively studied as solids of revolution. Despite this, the hypothesis that egg-shaped fruits are themselves solids of revolution remains unvalidated. To address this, 751 L.

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Understanding knowledge, attitudes and practices on Ebola Virus Disease: a multi-site mixed methods survey on preparedness in Rwanda.

BMC Public Health

December 2023

Laboratory of Emerging Infectious Diseases, Department of Microbiology and Immunology, Faculty of Medicine, Dalhousie University, Halifax, Canada.

Background: The overall goal of this survey was to understand the knowledge, attitudes, and practices related to the Ebola Virus Disease (EVD) in Rwanda.

Methods: This mixed-method cross-sectional survey was conducted in five selected districts of Rwanda. Quantitative data were collected from 1,010 participants using Kobo Collect Software and the analysis was performed using SPSS and Python software.

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Insect pollinators provide a natural ecosystem service to more than 80% of known flowering plants, many of which are part of our diet. However, their importance in Africa and an agriculture-dependent country like Rwanda has yet to receive attention. This encumbers policy formulation and investments in insect pollinators as a strategic agronomic input.

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Forests are a substantial terrestrial carbon sink, but anthropogenic changes in land use and climate have considerably reduced the scale of this system. Remote-sensing estimates to quantify carbon losses from global forests are characterized by considerable uncertainty and we lack a comprehensive ground-sourced evaluation to benchmark these estimates. Here we combine several ground-sourced and satellite-derived approaches to evaluate the scale of the global forest carbon potential outside agricultural and urban lands.

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The present article describes a dataset encompassing model outputs generated by the Weather Research and Forecasting (WRF) regional climate model. A high-resolution (1km) downscaling simulation was performed over two tropical islands, Reunion and Mauritius, situated in the South-West Indian Ocean (SWIO), with initial and boundary conditions provided by the ERA5 reanalysis with a global resolution of 0.25° × 0.

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Understanding what controls global leaf type variation in trees is crucial for comprehending their role in terrestrial ecosystems, including carbon, water and nutrient dynamics. Yet our understanding of the factors influencing forest leaf types remains incomplete, leaving us uncertain about the global proportions of needle-leaved, broadleaved, evergreen and deciduous trees. To address these gaps, we conducted a global, ground-sourced assessment of forest leaf-type variation by integrating forest inventory data with comprehensive leaf form (broadleaf vs needle-leaf) and habit (evergreen vs deciduous) records.

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SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) causing COVID-19 (coronavirus disease 2019) poses a greater health risk to immunocompromized individuals including people living with HIV (PLWH). However, most studies on PLWH have been conducted in higher-income countries. We investigated the post-vaccination antibody responses of PLWH in Rwanda by collecting peripheral blood from participants after receiving a second or third COVID-19 vaccine.

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This work addresses the problem of supervised classification for highly correlated high-dimensional data describing non-independent observations to identify SNPs related to a phenotype. We use a general penalized linear mixed model with a single random effect that performs simultaneous SNP selection and population structure adjustment in high-dimensional prediction models. Specifically, the model simultaneously selects variables and estimates their effects, taking into account correlations between individuals.

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Inequality Measure of Leaf Area Distribution for a Drought-Tolerant Landscape Plant.

Plants (Basel)

August 2023

Bamboo Research Institute, College of Ecology and Environment, Nanjing Forestry University, Nanjing 210037, China.

Measuring the inequality of leaf area distribution per plant (ILAD) can provide a useful tool for quantifying the influences of intra- and interspecific competition, foraging behavior of herbivores, and environmental stress on plants' above-ground architectural structures and survival strategies. Despite its importance, there has been limited research on this issue. This paper aims to fill this gap by comparing four inequality indices to measure ILAD, using indices for quantifying household income that are commonly used in economics, including the Gini index (which is based on the Lorenz curve), the coefficient of variation, the Theil index, and the mean log deviation index.

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Active Inference is a recently developed framework for modeling decision processes under uncertainty. Over the last several years, empirical and theoretical work has begun to evaluate the strengths and weaknesses of this approach and how it might be extended and improved. One recent extension is the "sophisticated inference" (SI) algorithm, which improves performance on multi-step planning problems through a recursive decision tree search.

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Determining the drivers of non-native plant invasions is critical for managing native ecosystems and limiting the spread of invasive species. Tree invasions in particular have been relatively overlooked, even though they have the potential to transform ecosystems and economies. Here, leveraging global tree databases, we explore how the phylogenetic and functional diversity of native tree communities, human pressure and the environment influence the establishment of non-native tree species and the subsequent invasion severity.

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The capacity of cells to adhere to, exert forces upon and migrate through their surrounding environment governs tissue regeneration and cancer metastasis. The role of the physical contractile forces that cells exert in this process, and the underlying molecular mechanisms are not fully understood. We, therefore, aimed to clarify if the extracellular forces that cells exert on their environment and/or the intracellular forces that deform the cell nucleus, and the link between these forces, are defective in transformed and invasive fibroblasts, and to indicate the underlying molecular mechanism of control.

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Deep learning approaches to landmark detection in tsetse wing images.

PLoS Comput Biol

June 2023

The South African Department of Science and Innovation-National Research Foundation (DSI-NRF) South African Centre for Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa.

Morphometric analysis of wings has been suggested for identifying and controlling isolated populations of tsetse (Glossina spp), vectors of human and animal trypanosomiasis in Africa. Single-wing images were captured from an extensive data set of field-collected tsetse wings of species Glossina pallidipes and G. m.

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Article Synopsis
  • - The study of invasion ecology focuses on understanding what allows introduced species to transition from scarce to abundant, highlighting the distinction between invasiveness and abundance, which are interconnected but distinct concepts.
  • - A three-pronged framework is proposed that examines traits, environmental context, and propagule pressure to assess a species' invasiveness, which combines various factors to explain its potential growth and impact.
  • - The invasibility of a community is influenced by available niches and the interactions within the community, where predicting a species' success depends on understanding its functional traits and how these interact with environmental conditions and other species.
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This study proposes a deep-learning-based solution (named CapsNetCovid) for COVID-19 diagnosis using a capsule neural network (CapsNet). CapsNets are robust for image rotations and affine transformations, which is advantageous when processing medical imaging datasets. This study presents a performance analysis of CapsNets on standard images and their augmented variants for binary and multi-class classification.

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Background: The integration of Artificial Intelligence (AI)-based technologies in medicine is advancing rapidly especially in the field of radiology. This however, is at a slow pace in Africa, hence, this study to evaluate the perspectives of Ghanaian radiologists.

Methods: Data for this cross-sectional prospective study was collected between September and November 2021 through an online survey and entered into SPSS for analysis.

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Background: Uterine fibroids are benign tumors that grow in or on the uterus of women. Globally, they occur in more than 80% of women of African ancestry and 70% in white women. Uterine fibroid requires much attention because of its high incidence rate among women of all races and ages.

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