Investigating macroecological patterns in coarse-grained microbial communities using the stochastic logistic model of growth.

The structure and diversity of microbial communities are intrinsically hierarchical due to the shared evolutionary history of their constituents. This history is typically captured through taxonomic assignment and phylogenetic reconstruction, sources of information that are frequently used to group microbes into higher levels of organization in experimental and natural communities. Connecting community diversity to the joint ecological dynamics of the abundances of these groups is a central problem of community ecology.

On-Surface Isomerization of Indigo within 1D Coordination Polymers.

Natural products are attractive components to tailor environmentally friendly advanced new materials. We present surface-confined metallosupramolecular engineering of coordination polymers using natural dyes as molecular building blocks: indigo and the related Tyrian purple. Both building blocks yield identical, well-defined coordination polymers composed of (1 dehydroindigo : 1 Fe) repeat units on two different silver single crystal surfaces.

Interaction of a four-level atom with a quantized field in the presence of a nonlinear Kerr medium.

Quantum entanglement and atomic coherence are examined for a system consisting of a four-level atom (FLA) interacted with a nonlinear quantum field. We assume that the FLA-field coupling, Kerr medium and quantified field are all [Formula: see text]-deformed with full nonlinear formalism. We consider N-configuration and cascade (C)-configuration of the FLA.

Dynamical Localization Transition of String Breaking in Quantum Spin Chains.

The fission of a string connecting two charges is an astounding phenomenon in confining gauge theories. The dynamics of this process have been studied intensively in recent years, with plenty of numerical results yielding a dichotomy: the confining string can decay relatively fast or persist up to extremely long times. Here, we put forward a dynamical localization transition as the mechanism underlying this dichotomy.

Decadal oscillation provides skillful multiyear predictions of Antarctic sea ice.

Over the satellite era, Antarctic sea ice exhibited an overall long-term increasing trend, contrary to the Arctic reduction under global warming. However, the drastic decline of Antarctic sea ice in 2014-2018 raises questions about its interannual and decadal-scale variabilities, which are poorly understood and predicted. Here, we identify an Antarctic sea ice decadal oscillation, exhibiting a quasi-period of 8-16 years, that is anticorrelated with the Pacific Quasi-Decadal Oscillation (r = -0.

Generalized Michaelis-Menten rate law with time-varying molecular concentrations.

The Michaelis-Menten (MM) rate law has been the dominant paradigm of modeling biochemical rate processes for over a century with applications in biochemistry, biophysics, cell biology, systems biology, and chemical engineering. The MM rate law and its remedied form stand on the assumption that the concentration of the complex of interacting molecules, at each moment, approaches an equilibrium (quasi-steady state) much faster than the molecular concentrations change. Yet, this assumption is not always justified.

Intermittent migration can induce pulses of speciation in a two-island system.

Geographic barriers can come and go depending on natural conditions. These fluctuations cause population cycles of expansion and contraction, introducing intermittent migrations that may not hinder speciation but rather promote diversification. Here, we study a neutral 2-island speciation model with intermittent migration driven by sea-level fluctuations.

A retrospective comparison of setup accuracy from CBCT and SGRT data in breast cancer patients.

Introduction: Both cone-beam computed tomography (CBCT) and surface-guided radiotherapy (SGRT) are used for breast patient positioning verification before treatment delivery. SGRT may reduce treatment time and imaging dose by potentially reduce the number of CBCT needed. The aim of this study was to compare the displacements resulting in positioning from the Image Guided Radiation Therapy (IGRT) 3D and SGRT methods and to design a clinical workflow for SGRT implementation in breast radiotherapy to establish an imaging strategy based on the data obtained.

Smart Buildings: Water Leakage Detection Using TinyML.

The escalating global water usage and the increasing strain on major cities due to water shortages highlights the critical need for efficient water management practices. In water-stressed regions worldwide, significant water wastage is primarily attributed to leakages, inefficient use, and aging infrastructure. Undetected water leakages in buildings' pipelines contribute to the water waste problem.

Physics-Based Signal Analysis of Genome Sequences: An Overview of GenomeBits.

A comprehensive overview of the recent physics-inspired genome analysis tool, GenomeBits, is presented. This is based on traditional signal processing methods such as discrete Fourier transform (DFT). GenomeBits can be used to extract underlying genomics features from the distribution of nucleotides, and can be further used to analyze the mutation patterns in viral genomes.

Complexity of spin configuration dynamics due to unitary evolution and periodic projective measurements.

We study the Hamiltonian dynamics of a many-body quantum system subjected to periodic projective measurements, which leads to probabilistic cellular automata dynamics. Given a sequence of measured values, we characterize their dynamics by performing a principal component analysis (PCA). The number of principal components required for an almost complete description of the system, which is a measure of complexity we refer to as PCA complexity, is studied as a function of the Hamiltonian parameters and measurement intervals.

The carbonyl-lock mechanism underlying non-aromatic fluorescence in biological matter.

Challenging the basis of our chemical intuition, recent experimental evidence reveals the presence of a new type of intrinsic fluorescence in biomolecules that exists even in the absence of aromatic or electronically conjugated chemical compounds. The origin of this phenomenon has remained elusive so far. In the present study, we identify a mechanism underlying this new type of fluorescence in different biological aggregates.

Classical analogue to driven quantum bits based on macroscopic pendula.

Quantum mechanics increasingly penetrates modern technologies but, due to its non-deterministic nature seemingly contradicting our classical everyday world, our comprehension often stays elusive. Arguing along the correspondence principle, classical mechanics is often seen as a theory for large systems where quantum coherence is completely averaged out. Surprisingly, it is still possible to reconstruct the coherent dynamics of a quantum bit (qubit) by using a classical model system.

Universality of evolutionary trajectories under arbitrary forms of self-limitation and competition.

The assumption of constant population size is central in population genetics. It led to a large body of results that is robust to modeling choices and that has proven successful to understand evolutionary dynamics. In reality, allele frequencies and population size are both determined by the interaction between a population and the environment.

Collective foraging of active particles trained by reinforcement learning.

Collective self-organization of animal groups is a recurring phenomenon in nature which has attracted a lot of attention in natural and social sciences. To understand how collective motion can be achieved without the presence of an external control, social interactions have been considered which regulate the motion and orientation of neighbors relative to each other. Here, we want to understand the motivation and possible reasons behind the emergence of such interaction rules using an experimental model system of light-responsive active colloidal particles (APs).

Zirconium Coordination Chemistry and Its Role in Optimizing Hydroxymate Chelation: Insights from Molecular Dynamics.

In the past decade, there has been a growth in using Zirconium-89 (Zr) as a radionuclide in nuclear medicine for cancer diagnostic imaging and drug discovery processes. Although one of the most popular chelators for Zr, desferrioxamine (DFO) is typically presented as a hexadentate ligand, our work suggests a different scenario. The coordination structure of the Zr-DFO complex has primarily been informed by DFT-based calculations, which typically ignore temperature and therefore entropic and dynamic solvent effects.

Metacommunity structure preserves genome diversity in the presence of gene-specific selective sweeps under moderate rates of horizontal gene transfer.

The horizontal transfer of genes is fundamental for the eco-evolutionary dynamics of microbial communities, such as oceanic plankton, soil, and the human microbiome. In the case of an acquired beneficial gene, classic population genetics would predict a genome-wide selective sweep, whereby the genome spreads clonally within the community and together with the beneficial gene, removing genome diversity. Instead, several sources of metagenomic data show the existence of "gene-specific sweeps", whereby a beneficial gene spreads across a bacterial community, maintaining genome diversity.

Thermal lensing approach based on parabolic approximation and Mach-Zehnder interferometer.

A thermal lensing approach based on parabolic approximation and Mach-Zehnder interferometer for measuring optical absorption and thermal diffusivity coefficients in pure solvents is described in this work. The approach combines the sensitivity of both thermal lensing methods and interferometry techniques. The photothermal effect is induced by a pump laser beam generating localized changes in the refractive index of the sample, which are observed as a shift in phase of the interference pattern.

Air pollution analysis in Northwestern South America: A new Lagrangian framework.

This study examines the spatiotemporal variations of PM, PM, SO, O, NO, and NO concentrations in Northwestern South America (NWSA). We assess the efficacy of existing policies, identify underlying phenomena, and highlight areas for further research. Significant findings have emerged by analyzing reanalysis and in-situ data, employing the WRF-Chem model, and utilizing a new Lagrangian framework designed to overcome some drawbacks common to analysis of pollution Long-Range Transport.

Measuring Thermal Diffusivity of Azoheteroarene Thin Layers by Photothermal Beam Deflection and Photothermal Lens Methods.

Measurement of thermal properties of thin films is challenging. In particular, thermal characterization is very difficult in semi-transparent samples. Here, we use two photothermal methods to obtain information about the thermal diffusivity as well as thermal conductivity of azoheteroarene functionalized polymer thin layers.

Multiscale relevance of natural images.

We use an agnostic information-theoretic approach to investigate the statistical properties of natural images. We introduce the Multiscale Relevance (MSR) measure to assess the robustness of images to compression at all scales. Starting in a controlled environment, we characterize the MSR of synthetic random textures as function of image roughness [Formula: see text] and other relevant parameters.

Free energy decompositions illuminate synergistic effects in interfacial binding thermodynamics of mixed surfactant systems.

Recent vibrational sum frequency generation spectroscopic experiments [Sengupta et al., J. Phys.

Environmental fluctuations explain the universal decay of species-abundance correlations with phylogenetic distance.

Multiple ecological forces act together to shape the composition of microbial communities. Phyloecology approaches-which combine phylogenetic relationships between species with community ecology-have the potential to disentangle such forces but are often hard to connect with quantitative predictions from theoretical models. On the other hand, macroecology, which focuses on statistical patterns of abundance and diversity, provides natural connections with theoretical models but often neglects interspecific correlations and interactions.

Diverging conformations guide dipeptide self-assembly into crystals or hydrogels.

The prediction of dipeptide assembly into crystals or gels is challenging. This work reveals the diverging conformational landscape that guides self-organization towards different outcomes. and experimental data enabled deciphering of the electronic circular dichroism (ECD) spectra of self-assembling dipeptides to reveal folded or extended conformers as key players.