475 results match your criteria: "Abdus Salam International Centre for Theoretical Physics[Affiliation]"

Swarm robots offer fascinating opportunities to perform complex tasks beyond the capabilities of individual machines. Just as a swarm of ants collectively moves large objects, similar functions can emerge within a group of robots through individual strategies based on local sensing. However, realizing collective functions with individually controlled microrobots is particularly challenging because of their micrometer size, large number of degrees of freedom, strong thermal noise relative to the propulsion speed, and complex physical coupling between neighboring microrobots.

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The effects of alkali-metal ions (Li, Na, K, Rb, and Cs) on the vibrational dynamics of the DNA ion-hydration shell were studied through classical molecular dynamics simulations. As a result, the vibrational spectra of the DNA-water-salt systems were calculated within the framework of two approaches, using dipole-dipole and velocity-velocity autocorrelation functions. We dissect the effect of the individual compartments of the DNA double helix (minor groove, major groove, and phosphate groups) on the behavior of the systems.

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Robert May famously used random matrix theory to predict that large, complex systems cannot admit stable fixed points. However, this general conclusion is not always supported by empirical observation: from cells to biomes, biological systems are large, complex, and often stable. In this paper, we revisit May's argument in light of recent developments in both ecology and random matrix theory.

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In this paper, we introduce a novel approach that paves the way for the creation of affordable, high-precision rainfall sensors utilizing microphone data. The cornerstone of this methodology is an innovative algorithm capable of converting audio recordings into distinctive features, which are subsequently processed by a compact machine learning model. Our findings demonstrate that this technique can attain a temporal resolution of 10 milliseconds with an accuracy of 80%, underscoring its potential to overcome the limitations imposed by the necessity for power infrastructure and specialized expertise in traditional rain sensing methods.

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Background And Purpose: With the availability of commercial electronic portal imaging detector-based in vivo dosimetry (EPID-based IVD) solutions, many radiotherapy departments are adopting this technology. However, comprehensive commissioning guidance is lacking. This study aims to provide a protocol for testing the accuracy and sensitivity of EPID-based IVD systems.

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Article Synopsis
  • This study analyzes the response of the Brazilian ionosphere to geomagnetic storms driven by Corotating Interaction Regions (CIR) and High-Speed Solar Wind Streams (HSS) during 2016-2017.
  • It investigates Vertical Total Electron Content (VTEC) variations across three regions: equatorial, northern crest, and southern crest of the Equatorial Ionization Anomaly, noting both enhancements and depletions of up to 30 and 20 TECu, respectively.
  • The research also highlights the timing of these variations, the role of electric fields in the ionosphere, and includes new catalogs for low-latitude ionospheric storms useful for space weather and modeling.
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Nonadiabatic molecular dynamics (NAMD) has become an essential computational technique for studying the photophysical relaxation of molecular systems after light absorption. These phenomena require approximations that go beyond the Born-Oppenheimer approximation, and the accuracy of the results heavily depends on the electronic structure theory employed. Sophisticated electronic methods, however, make these techniques computationally expensive, even for medium size systems.

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Enlightening the blind spot of the Michaelis-Menten rate law: The role of relaxation dynamics in molecular complex formation.

J Theor Biol

January 2025

Department of Biology, Hong Kong Baptist University, Kowloon, Hong Kong; Asia Pacific Center for Theoretical Physics, Pohang, Gyeongbuk 37673, Republic of Korea; Center for Quantitative Systems Biology & Institute of Computational and Theoretical Studies, Hong Kong Baptist University, Kowloon, Hong Kong; Abdus Salam International Centre for Theoretical Physics, 34151 Trieste, Italy. Electronic address:

The century-long Michaelis-Menten rate law and its modifications in the modeling of biochemical rate processes stand on the assumption that the concentration of the complex of interacting molecules, at each moment, rapidly approaches an equilibrium (quasi-steady state) compared to the pace of molecular concentration changes. Yet, in the case of actively time-varying molecular concentrations with transient or oscillatory dynamics, the deviation of the complex profile from the quasi-steady state becomes relevant. A recent theoretical approach, known as the effective time-delay scheme (ETS), suggests that the delay from the relaxation time of molecular complex formation contributes to the substantial breakdown of the quasi-steady state assumption.

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The Asian tiger mosquito, , has spread widely throughout Italy since its introduction, with significant public health implications. We examine how decadal temperature trends and sub-monthly heatwave events affect its climate-driven geographical distribution and temporal dynamics using a new regional-scale dynamical model. The model is calibrated using [Formula: see text] years of ovitrap data for Emilia-Romagna and reproduces the vector seasonality and, to a lesser extent, its inter-annual variability.

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In the present manuscript, we introduce a quantum system of two superconducting qubits (S-Qs) interacting with a quantized field under the influence of the Kerr nonlinear medium and Ising interaction. We formulate the Hamiltonian of the quantum model and determine the density operator of whole quantum system as well as quantum subsystems. We examine the dynamics of the quantumness measures for subsequent times including the S-Qs entanglement, S-Qs-field entanglement and quantum Fisher information in relation to the system parameters.

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Article Synopsis
  • The relationship between thermodynamics and computation has fascinated scientists since the 19th century, but its significance has grown due to the rising energy costs of digital devices.
  • Real-world computers, including biological ones like brains, operate under various physical constraints, which impact their thermodynamic dynamics and efficiency.
  • The emerging field of stochastic thermodynamics offers new analytical techniques to explore how these constraints affect the fundamental thermodynamic properties of systems performing computation.
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Dissecting the hydrogen bond network of water: Charge transfer and nuclear quantum effects.

Science

December 2024

Laboratory for Fundamental BioPhotonics (LBP), Institute of Bioengineering (IBI), and Institute of Materials Science (IMX), School of Engineering (STI), and Lausanne Centre for Ultrafast Science (LACUS), École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.

The molecular structure of water is dynamic, with intermolecular hydrogen (H) bond interactions being modified by both electronic charge transfer and nuclear quantum effects (NQEs). Electronic charge transfer and NQEs potentially change under acidic or basic conditions, but such details have not been measured. In this work, we developed correlated vibrational spectroscopy, a symmetry-based method that separates interacting from noninteracting molecules in self- and cross-correlation spectra, giving access to previously inaccessible information.

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The transition from single to multiple atomic slips, theoretically expected and important in atomic-scale friction, has never been demonstrated experimentally as a function of velocity. Here we show by high-resolution friction force microscopy on monolayer MoS_{2}/Au(111) that multiple slips leave a unique footprint-a frictional velocity weakening. Specifically, in a wide velocity interval from 10 to 100  nm/s, friction surprisingly decreases.

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A reconfigurable intelligent surface (RIS), a leading-edge technology, represents a new paradigm for adaptive control of electromagnetic waves between a source and a user. While RIS technology has proven effective in manipulating radio frequency waves using passive elements such as diodes and MEMS, its application in the optical domain is challenging. The main difficulty lies in meeting key performance indicators, with the most critical being accurate and self-adjusting positioning.

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The solvent-induced interactions (SIIs) between flexible solutes can be separated into two distinct components: the solvation-induced conformational effect and the joint solvation interaction (JSI). The JSI quantifies the thermodynamic effect of the solvent simultaneously accommodating the solutes, generalizing the typical notion of the hydrophobic interaction. We present a formal definition of the JSI within the framework of the mixture expansion, demonstrate that this definition is equivalent to the SII between rigid solutes, and propose a method, partially connected molecular dynamics, which allows one to compute the interaction with existing free energy algorithms.

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In this study, we employed a comprehensive computational approach to investigate the physical chemistry of the water networks surrounding hydrated peptide segments, as derived from molecular dynamics simulations. Our analysis uncovers a complex interplay of direct and water-mediated hydrogen bonds that intricately weave through the peptides. We demonstrate that these hydrogen bond networks encode critical information about the peptides' conformational behavior, with the dimensionality of these networks showing sensitivity to the peptides' conformations.

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Time-Resolved Circular Dichroism in Molecules: Experimental and Theoretical Advances.

Molecules

August 2024

Dipartimento di Scienze Chimiche e Farmaceutiche, University of Trieste, Via L. Giorgieri 1, 34127 Trieste, Italy.

Following changes in chirality can give access to relevant information on the function or reactivity of molecular systems. Time-resolved circular dichroism (TRCD) spectroscopy proves to be a valid tool to achieve this goal. Depending on the class of molecules, different temporal ranges, spanning from seconds to femtoseconds, need to be investigated to observe such chiroptical changes.

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How plasmonic nanostructures modulate the behavior of exciplexes and excimers within materials remains unclear. Thus, advanced knowledge is essential to bridge this gap for the development of optoelectronic devices that leverage the interplay between plasmonic and conjugated polymer hybrid materials. Herein, this work aims to explore the role of gold nanoparticles (AuNPs) in modulating exciplex and excimer states within the conjugated polymer poly(2,5-di(3,7-dimethyloctyloxy) cyanoterephthalylidene) (PDDCP), known for its photoluminescent and semi-conductive properties, aiming to create innovative composite materials with tailored optical features.

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Molar enamel-dentine junction shape of Pliobates cataloniae and other Iberian pliopithecoids.

J Hum Evol

October 2024

Institut Català de Paleontologia Miquel Crusafont (ICP-CERCA), Universitat Autònoma de Barcelona, Edifici ICTA-ICP, c/ Columnes s/n, 08193 Cerdanyola del Vallès, Barcelona, Spain. Electronic address:

The phylogenetic relationships of the small-bodied catarrhine Pliobates cataloniae (∼11.6 Ma, NE Iberian Peninsula) have been controversial since its original description. However, the recent report of additional dentognathic remains has supported its crouzeliid pliopithecoid status.

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Coarse-Grained Molecular Dynamics with Normalizing Flows.

J Chem Theory Comput

September 2024

CMAP, CNRS, Institut Polytechnique de Paris, École Polytechnique, 91120 Palaiseau, France.

We propose a sampling algorithm relying on a collective variable (CV) of midsize dimension modeled by a normalizing flow and using nonequilibrium dynamics to propose full configurational moves from the proposition of a refreshed value of the CV made by the flow. The algorithm takes the form of a Markov chain with nonlocal updates, allowing jumps through energy barriers across metastable states. The flow is trained throughout the algorithm to reproduce the free energy landscape of the CV.

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Article Synopsis
  • * Optimal sensor performance was achieved at pH 8.0, exhibiting a detection limit of 9.80 nM and a wide linear detection range of 0.1 to 10.0 µM, indicating excellent capabilities for real-time quantification of CRB in water, food, and biological samples with recovery rates between 98.6% and 101.5%.
  • * The research highlights the mechanism behind the sensor's operation, revealing that charge transfer
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Locuaz: an in silico platform for protein binders optimization.

Bioinformatics

August 2024

CONCEPT, Istituto Italiano di Tecnologia, Via Enrico Melen, 83 Genova Liguria 16152, Italy.

Motivation: Engineering high-affinity binders targeting specific antigenic determinants remains a challenging and often daunting task, requiring extensive experimental screening. Computational methods have the potential to accelerate this process, reducing costs and time, but only if they demonstrate broad applicability and efficiency in exploring mutations, evaluating affinity, and pruning unproductive mutation paths.

Results: In response to these challenges, we introduce a new computational platform for optimizing protein binders towards their targets.

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Wildfires impact on PM concentration in galicia Spain.

J Environ Manage

September 2024

Institute of Science and Technology Austria, Am Campus 1, Klosterneuburg, 3400, Austria; Earth System Physics, Abdus Salam International Centre for Theoretical Physics, Trieste, Italy.

Wildfire intensity and severity have been increasing in the Iberian Peninsula in recent years, particularly in the Galicia region, due to rising temperatures and accumulating drier combustible vegetation in unmanaged lands. This leads to substantial emissions of air pollutants, notably fine particles (PM), posing a risk to public health. This study aims to assess the impact of local and regional wildfires on PM levels in Galicia's main cities and their implications for air quality and public health.

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Complex networks are powerful mathematical tools for modelling and understanding the behaviour of highly interconnected systems. However, existing methods for analyzing these networks focus on local properties (e.g.

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Quantitative Analysis of the Synergy of Doping and Nanostructuring of Oxide Photocatalysts.

Materials (Basel)

July 2024

Electrical Engineering and Smart Systems Department, Faculty of Engineering, Islamic University of Gaza, Gaza P.O. Box 108, Palestine.

In this paper, the effect of doping and nanostructuring on the electrostatic potential across the electrochemical interface between a transition metal oxide and a water electrolyte is investigated by means of the Poisson-Boltzmann model. For spherical nanoparticles and nanorods, compact expressions for the limiting potentials at which the space charge layer includes the whole semiconductor are reported. We provide a quantitative analysis of the distribution of the potential drop between the solid and the liquid and show that the relative importance changes with doping.

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