Regulation of the NADP-glutamate dehydrogenase gene gdhA in Aspergillus nidulans by the Zn(II)2Cys6 transcription factor LeuB.

NADP-dependent glutamate dehydrogenase (NADP-GDH) is a key enzyme in the assimilation of alternative nitrogen nutrient sources through ammonium in fungi. In Aspergillus nidulans, NADP-GDH is encoded by gdhA. Several transcription factors are known to regulate gdhA expression, including AreA, the major transcription activator of nitrogen metabolic genes, and TamA, a co-activator of AreA.

Characterization and Distribution of a Potyvirus Associated with Passion Fruit Woodiness Disease in Uganda.

This article describes the incidence and etiology of a viral disease of passion fruit in Uganda. Symptoms, including those characteristic of passion fruit woodiness disease (PWD), were observed on 32% of plants in producing areas. Electron microscopic observations of infected tissues revealed flexuous filaments of ca.

Effects of drought and high temperature stress on synthetic hexaploid wheat.

Drought and high temperature often occurs simultaneously, causing significant yield losses in wheat (Triticum aestivum L.). The objectives of this study were to: (i) quantify independent and combined effects of drought and high temperature stress on synthetic hexaploid wheat genotypes at anthesis and at 21 days after anthesis; and (ii) determine whether responses to stress varied among genotypes.

Response of Aegilops species to drought stress during reproductive stages of development.

Drought stress is an important abiotic factor limiting wheat yield. Thirty-one accessions of Aegilops species belonging to five species were screened to identify species/accessions tolerant to drought stress and to measure traits associated with the tolerance. Plants were grown at full irrigation, 25/19°C day/night temperature and an 18h photoperiod.

Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum.

Background: Eight diverse sorghum (Sorghum bicolor L. Moench) accessions were subjected to short-read genome sequencing to characterize the distribution of single-nucleotide polymorphisms (SNPs). Two strategies were used for DNA library preparation.

Linkage analysis in unconventional mating designs in line crosses.

Linkage estimation and genetic map construction with genotyped DNA markers in plants preferentially employ a few maximally informative early-generation or recombinant-inbred mating designs. Fitting their recombination models to unconventional designs adapted to cultivar development (series of backcrossing, selfing, haploid-doubling, random-intercrossing, and sib-mating steps) distorts single- and multipoint linkage estimates even with dense marker coverage. Two methods are provided for correct linkage estimation in unconventional designs: fitting a correct multigeneration model, or correcting the estimates produced by fitting a one-generation model with any conventional software.

Mapping QTL main and interaction influences on milling quality in elite US rice germplasm.

Rice (Oryza sativa L.) head-rice yield (HR) is a key export and domestic quality trait whose genetic control is poorly understood. With the goal of identifying genomic regions influencing HR, quantitative-trait-locus (QTL) mapping was carried out for quality-related traits in recombinant inbred lines (RILs) derived from crosses of common parent Cypress, a high-HR US japonica cultivar, with RT0034, a low-HR indica line (129 RILs) and LaGrue, a low-HR japonica cultivar (298 RILs), grown in two US locations in 2005-2007.

Recent advances in rice blast effector research.

To cause rice blast disease, the fungus Magnaporthe oryzae produces biotrophic invasive hyphae that secrete effectors at the host-pathogen interface. Effectors facilitate disease development, but some (avirulence effectors) also trigger the host's resistance gene-mediated hypersensitive response and block disease. The number of cloned M.

Intraspecific functional diversity in hosts and its effect on disease risk across a climatic gradient.

The effects of host biodiversity on disease risk may vary greatly depending on host population structure and climatic conditions. Agricultural diseases such as potato late blight, caused by Phytophthora infestans, provide the opportunity to study the effects of intraspecific host diversity that is relatively well-defined in terms of disease resistance phenotypes and may have functional impacts on disease levels. When these systems are present across a climatic gradient, it is also possible to study how season length and conduciveness of the environment to disease may influence the effects of host diversity on disease risk.

Competition, facilitation, and niche differentiation in two foliar pathogens.

We studied competition between the obligate biotroph Puccinia triticina (designated here as Puccinia) and the facultative saprophyte Pyrenophora tritici-repentis (designated here as Pyrenophora) in older and younger leaves in a set of three host genotypes selected to be resistant to Puccinia only, Pyrenophora only, or neither. Age-related resistance is important for both of these pathogens. The facultative saprophyte Pyrenophora was generally a stronger competitor than the biotrophic Puccinia, even experiencing facilitation from the presence of Puccinia when Pyrenophora had the advantage of earlier inoculation.

Simultaneous painting of three genomes in hexaploid wheat by BAC-FISH.

Fluorescence in situ hybridization (FISH) is widely used in the physical mapping of genes and chromosome landmarks in plants and animals. Bacterial artificial chromosomes (BACs) contain large inserts, making them amenable for FISH mapping. In our BAC-FISH experiments, we selected 56 restriction fragment length polymorphism (RFLP)-locus-specific BAC clones from the libraries of Triticum monococcum and Aegilops tauschii, which are the A- and D-genome donors of wheat (Triticum aestivum, 2n = 6x = 42), respectively.

The avrRxo1 gene from the rice pathogen Xanthomonas oryzae pv. oryzicola confers a nonhost defense reaction on maize with resistance gene Rxo1.

Maize lines that contain the single dominant gene Rxo1 exhibit a rapid hypersensitive response (HR) after infiltration with the rice bacterial streak pathogen Xanthomonas oryzae pv. oryzicola, but not with the rice bacterial blight pathogen X. oryzae pv.

BAC-FISH in wheat identifies chromosome landmarks consisting of different types of transposable elements.

Fluorescence in situ hybridization (FISH) has been widely used in the physical mapping of genes and chromosome landmarks in plants and animals. Bacterial artificial chromosomes (BACs) contain large inserts making them amenable for FISH mapping. We used BAC-FISH to study genome organization and evolution in hexaploid wheat and its relatives.

Temperature-Sensitive Reaction of Winter Wheat Cultivar AGSECO 7853 to Stagonospora nodorum.

Stagonospora blotch is an important foliar and head disease of wheat (Triticum aestivum) in many regions of the world. To determine the reaction of winter wheat cultivars to Stagonospora blotch at different temperatures, seedlings of the hard winter wheat cvs. Newton, AGSECO 7853, and Heyne were inoculated with three isolates of Stagonospora nodorum and exposed to three temperature regimes (high, 29 and 21°C [day and night]; medium, 25 and 17°C; and low, 18 and 10°C).

Candidate defense genes from rice, barley, and maize and their association with qualitative and quantitative resistance in rice.

Candidate genes involved in both recognition (resistance gene analogs [RGAs]) and general plant defense (putative defense response [DR]) were used as molecular markers to test for association with resistance in rice to blast, bacterial blight (BB), sheath blight, and brown plant-hopper (BPH). The 118 marker loci were either polymerase chain reaction-based RGA markers or restriction fragment length polymorphism (RFLP) markers that included RGAs or putative DR genes from rice, barley, and maize. The markers were placed on an existing RFLP map generated from a mapping population of 116 doubled haploid (DH) lines derived from a cross between an improved indica rice cultivar, IR64, and a traditional japonica cultivar, Azucena.

Pathogen fitness penalty as a predictor of durability of disease resistance genes.

Host plant resistance has been used extensively for disease control in many crop species; however, the resistance conferred by many sources is not durable as a result of rapid changes in the pathogen. Although many resistance genes have been identified in plant germplasm, there is no easy way to predict the quality or durability of these resistance genes. In this review, we revisit the hypothesis that resistance genes imposing a high penalty to the pathogen for adaptation will likely be durable.

Dissection of defence response pathways in rice.

The cloning of major resistance genes has led to a better understanding of the molecular biology of the steps for induction of resistance, yet much remains to be discovered about the downstream genes that collectively confer resistance, i.e. the defence response (DR) genes.

Predicting durability of a disease resistance gene based on an assessment of the fitness loss and epidemiological consequences of avirulence gene mutation.

Durability of plant disease resistance (R) genes may be predicted if the cost of pathogen adaptation to overcome resistance is understood. Adaptation of the bacterial blight pathogen, Xanthomonas oryzae pv. oryzae (Xoo), to virulence in rice is the result of the loss of pathogen avirulence gene function, but little is known about its effect on aggressiveness under field conditions.

Changes in the Plasma Membrane Distribution of Rice Phospholipase D during Resistant Interactions with Xanthomonas oryzae pv oryzae.

Phospholipase D (PLD; EC 3.1.4.