21 results match your criteria: "100 Galvin Life Science Center[Affiliation]"

CDHu40: a novel marker gene set of neuroendocrine prostate cancer.

Brief Bioinform

September 2024

Department of Medical and Molecular Genetics, Indiana University School of Medicine, 410 W 10th Street, Indianapolis, IN 46202, United States.

Article Synopsis
  • Prostate cancer (PCa) is the most common cancer in American men, and a more aggressive form known as castration-resistant prostate cancer (CRPC) can develop during treatment, leading to worse outcomes.
  • In this study, researchers utilized computational methods to identify 500 potential marker genes related to cell cycle and neuronal functions, narrowing them down to 40 key candidates (CDHu40) that effectively differentiate neuroendocrine prostate cancer (NEPC) from other forms.
  • The CDHu40 gene set not only outperforms previous markers in predicting patient prognosis but also reveals strong associations with survival rates, suggesting it could serve as a valuable tool for identifying high-risk NEPC patients.
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Many gregarious insect species use aggregation and alarm pheromones. The bed bug, Cimex lectularius L., emits an alarm pheromone (AP), a 70/30 blend of (E)-2-hexenal and (E)-2-octenal, when threatened.

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Large-scale spatial drivers of avian schistosomes in Northern Michigan inland lakes.

Parasitology

April 2024

Department of Biological Sciences, Oakland University, 118 Library Drive, 374 Dodge Hall, Rochester, MI 48309, USA.

Avian schistosomes are snail-borne trematode parasites ( spp.) that can cause a nasty skin rash in humans when their cercariae mistake us for their normal bird hosts. We sought to investigate drivers of the spatial distribution of cercaria abundance throughout Northern Michigan lakes.

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The Prevalence of Oropharyngeal Dysphagia in Adults: A Systematic Review and Meta-analysis.

Dysphagia

April 2024

Postgraduate Program in Communication Disorders, Center for Advanced Studies in Systematic Review and Meta-Analysis - NARSM, Tuiuti University of Paraná, Curitiba, Brazil.

To determine the global prevalence of oropharyngeal dysphagia (OD) in adults. Six electronic databases (Embase, LILACS, LIVIVO, PubMed/Medline, Scopus, and Web of Science) were searched, in addition to gray literature (ASHA, Google Scholar, ProQuest Dissertation, and Theses). A random-effects model for meta-analysis of proportions was conducted, and heterogeneity was evaluated according to the moderator variable through subgroup analysis and meta-regression.

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Article Synopsis
  • The Yucatán Peninsula has unique aquifer ecosystems with diverse anchialine shrimp species, particularly from the Typhlatya genus, with four endemic species, three of which are federally protected in Mexico.
  • A comprehensive analysis combining molecular, morphological, and environmental data reveals significant species identity conflicts and newly identified genetic lineages among these shrimp.
  • The findings highlight the evolutionary adaptations of these species to different salinity levels and stress the importance of using interdisciplinary methods to evaluate biodiversity in complex aquatic environments.
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Aggregation can reduce an individual's predation risk, by decreasing predator hunting efficiency or displacing predation onto others. Here, we explore how the behaviors of predator and prey influence catch success and predation risk in Swainson's hawks attacking swarming Brazilian free-tailed bats on emergence. Lone bats including stragglers have a high relative risk of predation, representing ~5% of the catch but ~0.

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Selective laser sintering (SLS) is a prominent 3D printing modality that typically uses a polyamide (PA) powder as the substrate. One commercially available SLS material is known as PA2200, which is comprised of nylon 12 and titanium dioxide (TiO) and is widely used to generate 3D-printed parts. Here, we report a unique optical photoluminescence (PL) characteristic of native, white PA2200, in which it yields a persistent, phosphorescence-type emission.

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Forecasts of future forest change are governed by ecosystem sensitivity to climate change, but ecosystem model projections are under-constrained by data at multidecadal and longer timescales. Here, we quantify ecosystem sensitivity to centennial-scale hydroclimate variability, by comparing dendroclimatic and pollen-inferred reconstructions of drought, forest composition and biomass for the last millennium with five ecosystem model simulations. In both observations and models, spatial patterns in ecosystem responses to hydroclimate variability are strongly governed by ecosystem sensitivity rather than climate exposure.

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Diet induces parallel changes to the gut microbiota and problem solving performance in a wild bird.

Sci Rep

November 2020

School of Biological, Earth and Environmental Sciences, University College Cork, Distillery Fields, North Mall, Cork, Ireland.

The microbial community in the gut is influenced by environmental factors, especially diet, which can moderate host behaviour through the microbiome-gut-brain axis. However, the ecological relevance of microbiome-mediated behavioural plasticity in wild animals is unknown. We presented wild-caught great tits (Parus major) with a problem-solving task and showed that performance was weakly associated with variation in the gut microbiome.

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Optimal Control of the COVID-19 Pandemic with Non-pharmaceutical Interventions.

Bull Math Biol

September 2020

Department of Biological Sciences and Eck Institute of Global Health, 100 Galvin Life Science Center, Notre Dame, IN, 46556, USA.

Article Synopsis
  • The COVID-19 pandemic has led to social distancing measures worldwide, and there is a push to relax these restrictions due to economic impacts.
  • An optimal control analysis of SARS-CoV-2 transmission was conducted, focusing on strategies from May 2020 to December 2021, and informed by data from the USA.
  • The study found that maintaining stringent controls longer initially leads to fewer deaths and better control options later, whereas quickly relaxing measures increases the risk of overwhelming hospitals and complications in managing the pandemic.
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Complex ecological relationships, such as host-parasite interactions, are often modeled with laboratory experiments. However, some experimental laboratory conditions, such as temperature or infection dose, are regularly chosen based on convenience or convention, and it is unclear how these decisions systematically affect experimental outcomes. Here, we conducted a meta-analysis of 58 laboratory studies that exposed amphibians to the pathogenic fungus Batrachochytrium dendrobatidis (Bd) to understand better how laboratory temperature, host life stage, infection dose, and host species affect host mortality.

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Synaptic-like Vesicles Facilitate Pioneer Axon Invasion.

Curr Biol

August 2019

Department of Biological Sciences, University of Notre Dame, 100 Galvin Life Science Center, Notre Dame, IN 46556, USA; Center for Stem Cells and Regenerative Medicine, University of Notre Dame, 101 Galvin Hall, Notre Dame, IN 46556, USA. Electronic address:

Synaptic vesicles are indispensable for neuronal communication in mature circuits. Synaptic vesicle biogenesis must be concurrent with axon navigation for synaptogenesis, but whether synaptic vesicles are functionally employed in circuit formation before synaptogenesis is poorly understood. Here, we use time-lapse imaging and transgenesis in zebrafish to visualize the role of synaptic-like vesicles in navigation of dorsal root ganglia pioneer axons.

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How sample heterogeneity can obscure the signal of microbial interactions.

ISME J

November 2019

Department of Biological Sciences, University of Notre Dame, 100 Galvin Life Science Center, Notre Dame, IN, 46556, USA.

Microbial community data are commonly subjected to computational tools such as correlation networks, null models, and dynamic models, with the goal of identifying the ecological processes structuring microbial communities. A major assumption of these methods is that the signs and magnitudes of species interactions and vital rates can be reliably parsed from observational data on species' (relative) abundances. However, we contend that this assumption is violated when sample units contain any underlying spatial structure.

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With evolutionary drug resistance impacting efforts to treat disease, the need for small molecules that exhibit novel molecular mechanisms of action is paramount. In this study, we combined scaffold-directed synthesis with a hybrid experimental and transcriptome analysis to identify bis-spirooxindole cyclopropanes that inhibit cancer cell proliferation through disruption of ribosomal function. These findings demonstrate the value of an integrated, biologically inspired synthesis and assay strategy for the accelerated identification of first-in-class cancer therapeutic candidates.

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Negative frequency-dependent growth underlies the stable coexistence of two cosmopolitan aquatic plants.

Ecology

May 2019

Department of Biological Sciences, University of Notre Dame, 100 Galvin Life Science Center, Notre Dame, Indiana, 46556, USA.

Identifying and quantifying the mechanisms influencing species coexistence remains a major challenge for the study of community ecology. These mechanisms, which stem from species' differential responses to competition and their environments, promote coexistence if they give each species a growth advantage when rare. Yet despite the widespread assumption that co-occurring species stably coexist, there have been few empirical demonstrations in support of this claim.

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Non-invasive in vivo fluorescence imaging of apoptotic retinal photoreceptors.

Sci Rep

February 2019

Department of Biological Sciences, Center for Cancer, Genetic Diseases and Gene Regulation, Fordham University, Bronx, NY, 10458, USA.

Phosphatidylserine externalization is an early molecular signature for apoptosis. In many retinal degenerative diseases, photoreceptor neurons die by apoptosis. Here, we report utility of the phosphatidylserine-binding conjugate of Bis(zinc(II)-dipicolylamine (Zn-DPA) with Texas-red (PSVue-550) in transiently labeling apoptotic photoreceptors in living pigmented or albino rats and mice with retinal degeneration.

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Vector Preference Annihilates Backward Bifurcation and Reduces Endemicity.

Bull Math Biol

November 2019

Centro de Investigación en Matemáticas, A.C. (CIMAT), Jalisco S/N, Col. Valenciana, CP: 36023, Guanajuato, Gto, Mexico.

We propose and analyze a mathematical model of a vector-borne disease that includes vector feeding preference for carrier hosts and intrinsic incubation in hosts. Analysis of the model reveals the following novel results. We show theoretically and numerically that vector feeding preference for carrier hosts plays an important role for the existence of both the endemic equilibria and backward bifurcation when the basic reproduction number [Formula: see text] is less than one.

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Intracranial and hierarchical perspective on dietary plasticity in mammals.

Zoology (Jena)

October 2017

Department of Biological Sciences, 100 Galvin Life Science Center, University of Notre Dame, Notre Dame, IN 46556, USA; Department of Aerospace and Mechanical Engineering, University of Notre Dame, Notre Dame, IN 46556, USA; Department of Anthropology, University of Notre Dame, Notre Dame, IN 46556, USA. Electronic address:

The effect of dietary properties on craniofacial form has been the focus of numerous functional studies, with increasingly more work dedicated to the importance of phenotypic plasticity. As bone is a dynamic tissue, morphological variation related to differential loading is well established for many masticatory structures. However, the adaptive osteogenic response of several cranial sites across multiple levels of bony organization remains to be investigated.

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Radiopacity is a critical property of materials that are used for a range of radiological applications, including the development of phantom devices that emulate the radiodensity of native tissues and the production of protective equipment for personnel handling radioactive materials. Three-dimensional (3D) printing is a fabrication platform that is well suited to creating complex anatomical replicas or custom labware to accomplish these radiological purposes. We created and tested multiple ABS (Acrylonitrile butadiene styrene) filaments infused with varied concentrations of bismuth (1.

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Time-variant species pools shape competitive dynamics and biodiversity-ecosystem function relationships.

Proc Biol Sci

September 2016

Department of Integrative Biology, University of California Berkeley, 3040 Valley Life Sciences Building, Berkeley, CA 94720-3140, USA Department of Biological Sciences, University of Notre Dame, 100 Galvin Life Science Center, Notre Dame, IN 46556, USA

Biodiversity-ecosystem function (BEF) experiments routinely employ common garden designs, drawing samples from a local biota. The communities from which taxa are sampled may not, however, be at equilibrium. To test for temporal changes in BEF relationships, I assembled the pools of aquatic bacterial strains isolated at different time points from leaves on the pitcher plant Darlingtonia californica in order to evaluate the strength, direction and drivers of the BEF relationship across a natural host-associated successional gradient.

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Cumulative early life adversity predicts longevity in wild baboons.

Nat Commun

April 2016

Department of Evolutionary Anthropology, Box 90383, Duke University, Durham, North Carolina 27708, USA.

In humans and other animals, harsh circumstances in early life predict morbidity and mortality in adulthood. Multiple adverse conditions are thought to be especially toxic, but this hypothesis has rarely been tested in a prospective, longitudinal framework, especially in long-lived mammals. Here we use prospective data on 196 wild female baboons to show that cumulative early adversity predicts natural adult lifespan.

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