AI Article Synopsis

  • The study investigates how indoleglycerol phosphate is synthesized from indole and D-glyceraldehyde 3-phosphate through the enzyme tryptophan synthase using steady-state kinetic methods.
  • It reveals that only the non-hydrated form of D-glyceraldehyde 3-phosphate is used as a substrate and supports an ordered mechanism where D-glyceraldehyde 3-phosphate is added first.
  • The findings also show that indolepropanol phosphate acts as a competitive inhibitor, reinforcing the ordered mechanism and indicating high product inhibition due to the enzyme’s strong affinity for indoleglycerol phosphate.

Article Abstract

The mechanism of indoleglycerol phosphate synthesis from indole and D-glyceraldehyde 3-phosphate catalyzed by tryptophan synthase has been investigated by steady-state kinetic techniques. The equilibrium constant and the progress curves were measured by use of the difference in absorbance between indole and indoleglycerol phosphate. Stopped-flow measurements show that only the non-hydrated form of D-glyceraldehyde 3-phosphate serves as substrate. The product analogue indolepropanol phosphate was used as an inhibitor to discriminate between possible mechanisms. The data agree well with an ordered addition mechanism with D-glyceraldehyde 3-phosphate adding first. Mechanisms involving random addition of substrates or ordered addition with indole adding first can be excluded because indolepropanol phosphate is a competitive inhibitor only towards glyceraldehyde 3-phosphate. The high affinity of tryptophan synthase for indoleglycerol phosphate leads to product inhibition even at small extents of reaction. Glyceraldehyde 3-phosphate combines with the enzyme with an apparent second-order rate constant, which is not diffusion controlled and generates a site with high affinity for indole.

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1432-1033.1976.tb10350.xDOI Listing

Publication Analysis

Top Keywords

indoleglycerol phosphate
16
tryptophan synthase
12
d-glyceraldehyde 3-phosphate
12
catalyzed tryptophan
8
steady-state kinetic
8
indolepropanol phosphate
8
ordered addition
8
glyceraldehyde 3-phosphate
8
high affinity
8
phosphate
6

Similar Publications

Indole is produced in nature by diverse organisms and exhibits a characteristic odor described as animal, fecal, and floral. In addition, it contributes to the flavor in foods, and it is applied in the fragrance and flavor industry. In nature, indole is synthesized either from tryptophan by bacterial tryptophanases (TNAs) or from indole-3-glycerol phosphate (IGP) by plant indole-3-glycerol phosphate lyases (IGLs).

View Article and Find Full Text PDF
Article Synopsis
  • Experimental observations of enzyme activity highlight the importance of protein motions and allosteric networks during catalysis, specifically in active turnover conditions.
  • The study focuses on analyzing the conformational dynamics of the alpha subunit of tryptophan synthase, using the D60N variant to better understand enzyme states during the transition from substrate to product.
  • Findings suggest that structural changes and new allosteric connections are crucial for effective coordination of product transport between subunits, emphasizing the complexity of enzyme function beyond simple substrate binding.
View Article and Find Full Text PDF

Genes and -Competitors or Cooperators?

Genes (Basel)

February 2020

Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, 02-787 Warsaw, Poland.

Two genes, and , both encoding indole-3-glycerol phosphate lyase (IGL), are believed to control the conversion of indole-3-glycerol phosphate (IGP) to indole. The first of these has generally been supposed to be regulated developmentally, being expressed at early stages of plant development with the indole being used in the benzoxazinoid (BX) biosynthesis pathway. In contrast, it has been proposed that the second one is regulated by stresses and that the associated free indole is secreted as a volatile.

View Article and Find Full Text PDF

The L-tryptophan (Trp) biosynthesis pathway is highly regulated at multiple levels. The three types of regulations identified so far, namely repression, attenuation, and feedback inhibition have greatly impacted our understanding and engineering of cellular metabolism. In this study, feed-forward regulation is discovered as a novel regulation of this pathway and explored for engineering Escherichia coli for more efficient Trp biosynthesis.

View Article and Find Full Text PDF
Article Synopsis
  • Tryptophan synthase is an enzyme with complex allosteric interactions that regulate its two subunits' activity and ligand gate functions.
  • The enzyme carries out 13 different reaction steps, transferring intermediate products directly between its subunits.
  • A stochastic model developed in previous research is utilized to analyze the thermodynamics of tryptophan synthase, exploring the Gibbs energy landscape, entropy production, and information exchange due to allosteric interactions.
View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!