Opening of the extraordinarily stable mini-hairpin d(GCGAAGC).

Nucleic Acids Res

LPBC (CNRS URA 2056), Université Pierre et Marie Curie, 4 Place Jussieu, Case 138, 75252 Paris Cedex 05, France.

Published: November 1997

For the purposes of the antisense strategy oligodeoxyribonucleotides can be protected against serum and cell nuclease digestion by tagging at their 3'-end with a sequence naturally forming a very stable hairpin, d(GCGAAGC). This nuclease-resistant hairpin is also known for its high thermostability. We demonstrate in this study that attachment of d(GCGAAGC) at the 3'-end of an oligodeoxyribonucleotide does not hinder hybridization of the 5'-part of this oligonucleotide to a complementary DNA strand. Moreover, the hairpin is in equilibrium between a folded and an open structure, with an energy minimum in favor of pairing if it is possible, even with mismatches.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC147075PMC
http://dx.doi.org/10.1093/nar/25.22.4608DOI Listing

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