Extracellular proteases of Porphyromonas gingivalis specific for arginyl peptide bonds are considered to be important virulence factors in periodontal disease. In order to determine the number, inter-relationship and kinetic properties of these proteases, extracellular enzymes with this peptide-bond specificity were purified and characterized from P. gingivalis W50. Three forms, which we denote RI, RI-A and RI-B, accounted for all of the activity in the supernatant. All three enzymes contain an alpha chain of approximately 54 kDa with the same N-terminal amino acid sequence. RI is a heterodimer of non-covalently linked alpha and beta chains which migrate to the same position on SDS/PAGE but which can be resolved by 8 M urea/PAGE. RI-A and RI-B are both monomeric, but the molecular mass of RI-B (70-80 kDa) is significantly increased due to post-translational modification with lipopolysaccharide. All forms show absolute specificity for peptide bonds with Arg in the P1 position and are also capable of hydrolysing N-terminal Arg and C-terminal Arg-Arg peptide bonds. Thus they show limited amino- and carboxy-peptidase activity. For the hydrolysis of Nalpha-benzoyl-L-Arg-p-nitroanilide, the pH optimum is 8.0 at 30 degrees C. The Vmax for all three enzymes is controlled by ionization of two residues with apparent pKas at 30 degrees C of 6. 5+/-0.05 and 9.7+/-0.05, and DeltaH values of approximately 29 kJ/mol and approximately 24 kJ/mol in the enzyme-substrate complex. By analogy with papain, the pKa of 6.5 could be ascribed to a Cys and the pKa of 9.7 to a His residue. E-64 [L-trans-epoxysuccinyl-leucylamide-4-(4-guanidino)butane] is a competitive inhibitor of RI, RI-A and RI-B. Based on physical properties and kinetic behaviour, RI-A appears to be analogous to gingipain from P. gingivalis HG66. However the alpha/beta structure of RI differs significantly from that of the high-molecular-mass multimeric complex of gingipain containing four haemagglutinins described by others. Since the genes for RI and high-molecular-mass gingipain are identical, the data indicate that an alternative processing pathway is involved in the formation of RI from the initial precursor. Furthermore, the identical N-termini and enzymic properties of the catalytic component of RI, RI-A and RI-B suggest that the maturation pathway of the RI precursor may also give rise to RI-A and RI-B. The physiological functions of these isoforms and their role in the disease process may become more apparent through examination of their interactions with host proteins.
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http://dx.doi.org/10.1042/bj3230701 | DOI Listing |
Sci Rep
July 2014
Department of Cardiology, Pulmonology, Hypertension and Nephrology, Ehime University Graduate School of Medicine, Toon City, Ehime, 791-0295, Japan.
Hyperhomocystemia has been reported to be associated with cardiovascular disease, especially stroke. The resistive index (RI) estimated by carotid ultrasound is an established variable for estimating the risk of cerebral infarction. The aim of this study was to evaluate the relationship between homocysteine concentration and carotid RI, a marker of cerebral vascular resistance in essential hypertensive patients.
View Article and Find Full Text PDFIntervirology
March 2010
Department of Pharmacy, Kobe Asahi Hospital, Kobe, Japan.
We investigated whether sustained virological response (SVR) and non-SVR by chronic hepatitis C patients to pegylated interferon plus ribavirin (PEG-IFN/RBV) combination therapy are distinguishable by viral factors such as the IFN/RBV resistance-determining region (IRRDR) and by on-treatment factors through new indices such as the rebound index (RI). The first RI (RI-1st; the viral load at week 1 divided by the viral load at 24 h) and the second RI (RI-2nd; the viral load at week 2 divided by the viral load at 24 h) were calculated. The subject patients were divided into 3 groups based on RI-1st and RI-2nd: an RI-A group (RI-1st < or = 1.
View Article and Find Full Text PDFAnal Chim Acta
May 2009
Institute of Forensic Research, Westerplatte 9, 31-033 Krakow, Poland.
Growing interest in applications of Bayesian Networks (BNs) in forensic science raises the question whether BN could be used in forensic practice for the evaluation of glass objects described by the results of physico-chemical analysis, especially the information obtained from analysis performed by Glass Refractive Index Measurement technique. Comparison of glass fragments, i.e.
View Article and Find Full Text PDFAnal Chim Acta
May 2009
Institute of Forensic Research, Westerplatte 9, 31-033 Krakow, Poland.
One of the problems of analysis of forensic evidence such as glass fragments, is the determination of their use-type category, e.g. does a glass fragment originate from an unknown window or container? Very small glass fragments arise during various accidents and criminal offences, and could be carried on the clothes, shoes and hair of participants.
View Article and Find Full Text PDFJ Forensic Sci
January 2009
Institute of Forensic Research, Westerplatte 9, 31-033 Krakow, Poland.
The aim of this study was to assess the efficiency of likelihood ratio (LR)-based measures when they are applied to solving various classification problems for glass objects which are described by elemental composition, and refractive index (RI) values, and compare LR-based methods to other classification methods such as support vector machines (SVM) and naïve Bayes classifiers (NBC). One hundred and fifty-three glass objects (23 building windows, 25 bulbs, 32 car windows, 57 containers, and 16 headlamps) were analyzed by scanning electron microscopy coupled with an energy dispersive X-ray spectrometer. Refractive indices for building and car windows were measured before (RI(b)), and after (RI(a)) an annealing process.
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