A robust, automatic volume registration algorithm based on intensity gradients is presented. This algorithm can successfully perform registrations under conditions of unrelated intervolume voxel intensities, significant object displacements, and/or significant amounts of missing data. It also allows the user to visualize the registration convergence, clearly illustrating any source of registration errors. This algorithm consists of a matching algorithm based on iteratively finding the correspondence of the closest voxels containing a high three-dimensional intensity gradient magnitude. This algorithm was tested by registering T2-weighted MR volumes that had undergone varying displacement transformations to simultaneously acquired proton-density volumes. These transformations involved rotations of up to 25 degrees followed by translations of up to 25 mm along the axis of rotation. For all registrations, the mean registration error was less than one-fifth of a voxel and the mean registration time was less than 30 minutes. In conclusion, this algorithm is shown to be a powerful method of sequence-independent MR volume registration that is simple to both use and understand.
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http://dx.doi.org/10.1002/jmri.1880070227 | DOI Listing |
Curr Biol
January 2025
Wildlife Research Center, Kyoto University, Kyoto 6068203, Japan; Institute for Advanced Study, Kyoto University, Kyoto 6068501, Japan; Institute for the Future of Human Society, Kyoto 6068304, Japan.
The decision to urinate involves a complex combination of both physiological and social considerations. However, the social dimensions of urination remain largely unexplored. More specifically, aligning urination in time (i.
View Article and Find Full Text PDFPlants (Basel)
October 2024
School of Landscape Architecture, Northeast Forestry University, Harbin 150040, China.
Spontaneous vegetation is an important component of urban biodiversity and an excellent agent for exploring the mutual feedback mechanism between urbanization and urban ecosystems. Rapid urbanization has had a significant impact on the composition, structure, and distribution patterns of urban spontaneous vegetation diversity. Studying the diversity distribution patterns and causes of urban plant communities is beneficial for understanding the formation and maintenance mechanisms of plant diversity in specific urban habitats.
View Article and Find Full Text PDFCurr Biol
November 2024
Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany; UCL Genetics Institute, Department of Genetics, Evolution and Environment, University College London, London WC1E 6BT, UK. Electronic address:
Establishing the genetic and geographic structure of populations is fundamental, both to understand their evolutionary past and preserve their future. Nevertheless, the patterns of genetic population structure are unknown for most endangered species. This is the case for bonobos (Pan paniscus), which, together with chimpanzees (Pan troglodytes), are humans' closest living relatives.
View Article and Find Full Text PDFProc SPIE Int Soc Opt Eng
February 2024
Vanderbilt University, Department of Computer Science, Nashville, TN USA.
Mapping information from photographic images to volumetric medical imaging scans is essential for linking spaces with physical environments, such as in image-guided surgery. Current methods of accurate photographic image to computed tomography (CT) image mapping can be computationally intensive and/or require specialized hardware. For general purpose 3-D mapping of bulk specimens in histological processing, a cost-effective solution is necessary.
View Article and Find Full Text PDFBMC Res Notes
July 2024
NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW, 2568, Australia.
Objective: Insertion and deletion (indel) analysis of CRISPR-Cas guide RNAs (gRNAs) is crucial in gene editing to assess gRNA efficiency and indel frequency. This study evaluates the utility of CRISPResso2 with Oxford Nanopore sequencing data (nCRISPResso2) for gRNA indel screening, compared to two common Sanger sequencing-based methods, TIDE and ICE. To achieve this, sheep and horse fibroblasts were transfected with Cas9 and a gRNA targeting the myostatin (MSTN) gene.
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