The binding of O-methyl and fluorodeoxy derivatives of methyl beta-lactoside to the Ricinus communis toxin (RCA60) and agglutinin (RCA120) was studied in order to determine the donor/acceptor relationships of the hydrogen bonds between the hydroxyl groups of methyl beta-lactoside and the binding sites of the lectins. Free energy contributions of the hydrogen bonds at each position have been estimated from these data and from those previously reported for the monodeoxy derivatives [Rivera-Sagredo, A., Solís, D., Díaz-Mauriño, T., Jiménez-Barbero, J. & Martín-Lomas, M. (1991) Eur. J. Biochem. 197, 217-228; Rivera-Sagredo, A., Jiménez-Barbero, J., Martín-Lomas, M., Solís, D. & Díaz-Mauriño, T. (1992) Carbohydr. Res. 232, 207-226]. The nature of the groups of the lectins involved in hydrogen bonding has been predicted on the basis of the free energy data. Analysis of the results indicates that both the C-3' and C-4' hydroxyl groups act as hydrogen-bond donors to charged groups of both RCA60 and RCA120. The C-6' and probably also the C-2' hydroxyl groups participate both as donors and as acceptors of two hydrogen bonds with neutral groups of the lectins. And finally, the C-6 hydroxyl group possibly acts as a donor of a weak hydrogen bond to a neutral group in RCA60, but not in RCA120. The results provide a molecular basis to explain some features of the binding specificity of the lectins. Comparison of RCA60 binding data with the recently refined X-ray crystal structure of the RCA60-lactose complex shows similarities but also some discrepancies that can be attributed to the marked influence of the pH on the carbohydrate-lectin interaction.
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http://dx.doi.org/10.1111/j.1432-1033.1993.tb17968.x | DOI Listing |
Biochemistry
November 2024
Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556-5670, United States.
An emerging NMR method, analysis, has been applied to investigate context effects on the conformational properties of several human milk oligosaccharides (HMOs). The model of the β-(1→4) linkage in the disaccharide, methyl β-lactoside (MeL), was compared to those obtained for the same linkage in the HMO trisaccharides, methyl 2'-fucosyllactoside (Me2'FL) and methyl 3-fucosyllactoside (Me3FL), and in the tetrasaccharide, methyl 2',3-difucosyllactoside (Me2',3DFL). analysis revealed significant context effects on the mean values and circular standard deviations (CSDs) of the psi (ψ) torsion angles in these linkages.
View Article and Find Full Text PDFACS Omega
July 2022
Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556-5670, United States.
Nonconventional NMR spin-coupling constants were investigated to determine their potential as conformational constraints in modeling of the -glycosidic linkages of oligosaccharides. Four ( , , , and ) and eight ( , , , , , , , and ) spin-couplings in methyl β-d-galactopyranosyl-(1→4)-β-d-glucopyranoside (methyl β-lactoside) were calculated using density functional theory (DFT) to determine their dependencies on -glycosidic linkage C-O torsion angles, ϕ and ψ, respectively. Long-range was also examined as a potential conformational constraint of either ϕ or ψ.
View Article and Find Full Text PDFActa Crystallogr C Struct Chem
October 2021
Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556-5670, USA.
Methyl β-lactoside [methyl β-D-galactopyranosyl-(1→4)-β-D-glucopyranoside] monohydrate, CHO·HO, (I), was obtained via spontaneous transformation of methyl β-lactoside methanol solvate, (II), during air-drying. Cremer-Pople puckering parameters indicate that the β-D-Galp (β-D-galactopyranosyl) and β-D-Glcp (β-D-glucopyranosyl) rings in (I) adopt slightly distorted C chair conformations, with the former distorted towards a boat form (B) and the latter towards a twist-boat form (S). Puckering parameters for (I) and (II) indicate that the conformation of the βGalp ring is slightly more affected than the βGlcp ring by the solvomorphism.
View Article and Find Full Text PDFInt J Biol Macromol
July 2019
EA3900-BIOPI, Biologie des Plantes et Innovation, SFR Condorcet FR CNRS 3417, Université de Picardie, 33 Rue St Leu, FR-80039 Amiens, France. Electronic address:
The discovery of molecules that can inhibit the action of phytopathogens is essential to find alternative to current pesticides. Pectin methylesterases (PME), enzymes that fine-tune the degree of methylesterification of plant cell wall pectins, play a key role in the pathogenicity of fungi or bacteria. Here we report the synthesis of new lactoside derivatives and their analysis as potential PME inhibitors using three plants and one fungal PME.
View Article and Find Full Text PDFActa Crystallogr C Struct Chem
February 2019
Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556-5670, USA.
The crystal structures of 2,3,4,6-tetra-O-benzoyl-β-D-galactopyranosyl-(1→4)-1,2,6-tri-O-benzoyl-β-D-glucopyranose ethyl acetate hemisolvate, CHO·0.5CHO, and 1,2,4,6-tetra-O-benzoyl-β-D-glucopyranose acetone monosolvate, CHO·CHO, were determined and compared to those of methyl β-D-galactopyranosyl-(1→4)-β-D-glucopyranoside (methyl β-lactoside) and methyl β-D-glucopyranoside hemihydrate, CHO·0.5HO, to evaluate the effects of O-benzoylation on bond lengths, bond angles and torsion angles.
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