The influence of the ionic strength of solution on the protonation of the Micrococcus lysodeicticus DNA molecule was studied by means of circular dichroism, spectrophotometric and potentiometric titration in a wide range of the supporting electrolyte concentration ([NaCl] = 0.5-0.005 M). The concept of local pH determined in Poisson-Boltzman approximation by the electrostatic potential in the monohydrate layer of the macromolecule was used for the interpretation of the data obtained. A phase diagram was constructed in a plot of pHloc vs. log[Na+], which described the polymorphic transformations in the protonated DNA molecule. The comparison of the data obtained with those for the calf thymus DNA showed that the polyelectrolyte invariance of the acid-base equilibrium in natural DNAs is electrostatic in origin and does not depend on the GC content.
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Nucleic Acids Res
November 2022
Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Center for Biosafety Mega-Science, Chinese Academy of Sciences, No. 44 Xiao Hong Shan, Wuhan, Hubei, 430071, China.
The nucleic acid polymerase-catalyzed nucleotidyl transfer reaction associated with polymerase active site closure is a key step in the nucleotide addition cycle (NAC). Two proton transfer events can occur in such a nucleotidyl transfer: deprotonation of the priming nucleotide 3'-hydroxyl nucleophile and protonation of the pyrophosphate (PPi) leaving group. In viral RNA-dependent RNA polymerases (RdRPs), whether and how active site residues participate in this two-proton transfer reaction remained to be clarified.
View Article and Find Full Text PDFScand J Clin Lab Invest
September 2022
Department of Biomedicine, Aarhus University, Aarhus, Denmark.
Rational treatment and thorough diagnostic classification of acid-base disorders requires quantitative understanding of the mechanisms that generate and dissipate loads of acid and base. A natural precondition for this tallying is the ability to quantify the acid content in any specified fluid. Physical chemistry defines the pH-dependent charge on any buffer species, and also on strong ions on which, by definition, the charge is pH-invariant.
View Article and Find Full Text PDFEur J Pharmacol
June 2022
Heart Center and Beijing Key Laboratory of Hypertension, Beijing Chaoyang Hospital, Capital Medical University, Beijing, 100020, China; Medical Research Center, Beijing Institute of Respiratory Medicine and Beijing Chaoyang Hospital, Capital Medical University, Beijing, 100020, China; Department of Cardiology, Beijing Chaoyang Hospital, Capital Medical University, Beijing, 100020, China. Electronic address:
Cardiovascular disorders and associated renal diseases account for the main cause of morbidity and mortality worldwide, necessitating the development of novel effective approaches for the prevention and treatment of cardiorenal diseases. Mammalian sirtuins (SIRTs) function as nicotinamide adenine dinucleotide (NAD)-dependent protein/histone deacetylases. Seven members of SIRTs share a highly invariant catalytic core domain responsible for the specific enzymatic activity.
View Article and Find Full Text PDFMol Pharm
July 2021
in-ADME Research, 1732 First Avenue #102, New York, New York 10128, United States.
A multiphasic mass action equilibrium model is used to show that the critical pH in the acid-base disproportionation of a solid salt into its corresponding solid free-base form in aqueous suspensions, widely known as "pH", is incompletely interpreted. It is shown that the traditional thermodynamic model does not predict the invariance of pH and solubility during the salt-to-free-base conversion process in an alkalimetric titration. Rather, the conversion entails a range of pH and solubility values, depending on the amount of added excess salt above that needed to form a saturated solution.
View Article and Find Full Text PDFInorg Chem
March 2021
Institute of Chemistry and Chemical Technology, Federal Research Center "Krasnoyarsk Science Center Siberian Branch Russian Academy of Sciences (SB RAS)", Krasnoyarsk 660036, Russian Federation.
In this work, we demonstrate the fundamental relationships between stability constants and periodic, acid-base, and structural parameters for complexes of some 1,3-diketones. The four analogues of hexafluoroacetylacetone-2-thenoyltrifluoroacetone, 2-furoyltrifluoroacetone, benzoyltrifluoroacetone, and 2-naphthyltrifluoroacetone-have been studied as chelating ligands for 16 rare-earth metals (Sc, Y, La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, Yb, and Lu) in aqueous solutions. Systems have been investigated spectrophotometrically using a multiwave nonlinear least-squares regression algorithm for data processing.
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