The structure of Urechis caupo hemoglobin in the cyanomet state has been refined to R = 0.148 at 2.5 A resolution. Although the tertiary structure is similar to that of other vertebrate and invertebrate hemoglobins the quaternary structures of this tetramer is unique as suggested by the earlier determination of the 5.0 A resolution structure. The G and H helices of the hemoglobin are on the outside of the tetramer facing the solvent in contrast to human hemoglobin where the G and H helices form inter-subunit contacts. A substantial number of tightly bound water molecules help mediate interactions between subunits. The unusual arrangement of subunits is consistent with the general lack of co-operativity of oxygen uptake for Urechis caupo hemoglobin.
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http://dx.doi.org/10.1006/jmbi.1994.1211 | DOI Listing |
J Biol Chem
March 2011
Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, USA.
Lombricine kinase is a member of the phosphagen kinase family and a homolog of creatine and arginine kinases, enzymes responsible for buffering cellular ATP levels. Structures of lombricine kinase from the marine worm Urechis caupo were determined by x-ray crystallography. One form was crystallized as a nucleotide complex, and the other was substrate-free.
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Department of Zoology, University of Florida, Gainesville, Florida 32611, USA.
Hydrogen sulfide (H2S) at concentrations of about 0.05 to 1 mmol.l(-1) appears to function as a gasotransmitter in vertebrates, analogous to nitric oxide (NO) and carbon monoxide, but the actions of H2S in invertebrate tissue have not been well studied.
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September 2004
Evolutionary Genomics Department, DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, 2800 Mitchell Drive, Walnut Creek, CA, USA.
Background: Mitochondria contain small genomes that are physically separate from those of nuclei. Their comparison serves as a model system for understanding the processes of genome evolution. Although hundreds of these genome sequences have been reported, the taxonomic sampling is highly biased toward vertebrates and arthropods, with many whole phyla remaining unstudied.
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November 2002
Bodega Marine Laboratory, University of California Davis, PO Box 247, Bodega Bay, CA 94923, USA.
The toxicity of water-soluble fractions of biodegraded crude oil (BWSF) to embryos and larvae of two marine invertebrates, the white sea urchin (Lytechinus anamesus) and the fat innkeeper (Urechis caupo), was studied. Santa Barbara Channel crude oil was artificially weathered and subjected to biodegradation using a mixed microbe culture obtained from natural oil seep sites. The degradation culture inoculated with seep sediment microbes accumulated 43.
View Article and Find Full Text PDFJ Exp Biol
October 2002
Monterey Bay Aquarium Research Institute, 7700 Sandholdt Road, Moss Landing, CA 95039, USA.
Intracellular symbiosis requires that the host satisfy the symbiont's metabolic requirements, including the elimination of waste products. The hydrothermal vent tubeworm Riftia pachyptila and the hydrocarbon seep worm Lamellibrachia cf luymesi are symbiotic with chemolithoautotrophic bacteria that produce sulfate and protons as end-products. In this report, we examine the relationship between symbiont metabolism and host proton equivalent elimination in R.
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