The folding of the trimeric phage P22 tailspike protein is affected by single amino acid substitutions designated temperature-sensitive folding (tsf) mutations. Their phenotypes are alleviated by two repeatedly isolated global suppressor (su) mutations (su V331A and su A334V) and by two additional substitutions (su V331G and su A334I), accessible through site-directed mutagenesis. We investigated the influence of the suppressor mutations on tailspike refolding in vitro, on its maturation at high expression levels in vivo, and on the rates of thermal unfolding of the native protein. All su mutations improved the folding efficiency in vitro and in vivo, but the relative effects of substitutions at position 334 were more pronounced in vivo, whereas the 331 substitutions were more effective in vitro. V331G caused the strongest increase in refolding yields of any single mutation, and was as effective as the V331A/A334V double mutation, where the two single mutations exhibited an additive effect. Both V331A and V331G retarded thermal denaturation, while A334V did not affect, and A334I accelerated unfolding. A334I is the first mutation found to affect the folding of the tailspike and the thermal stability of the native protein in opposite directions. The observed effects can be rationalized on the basis of the recently determined crystal structure of an N-terminally shortened tailspike. As the backbone dihedral angles of Val331 (phi = -119 degrees, psi = -142 degrees) are unusual for non-glycine residues, V331G and V331A may remove steric strain and thereby stabilize folding intermediates and the native protein. The beta-branched side-chains of Val and Ile substituted for Ala334 in the interior of the protein may improve a hydrophobic stack of residues in the large parallel beta-helix. This is likely important in loosely structured early folding intermediates, but not in the very rigid native structure, where the side-chain of Ile can hardly be accommodated.
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http://dx.doi.org/10.1006/jmbi.1995.0288 | DOI Listing |
J Chem Phys
January 2025
Research and Development Center, Beijing Genetech Pharmaceutical Co., Ltd., Beijing 102200, People's Republic of China.
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Faculty of Civil Engineering and Mechanics, Kunming University of Science and Technology, Kunming 650500, China.
The failure mode of thin-walled C-channel beams typically manifests as premature local buckling of the compression flange, leading to insufficient utilization of material strength in both the flange and the web. To address this issue, this study adopts the approach of increasing the number of bends to reinforce the flange and adding V-shaped stiffeners in the middle of the web to reduce the width-to-thickness ratio of the plate elements, thereby delaying local buckling and allowing for greater plastic deformation. However, the challenge lies in the irregular cross-sectional shape and complex buckling patterns.
View Article and Find Full Text PDFNat Struct Mol Biol
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Key Laboratory of Multiple Organ Failure (Ministry of Education), Departments of Microbiology and General Intensive Care Unit of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.
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Istituto Pasteur - Fondazione Cenci Bolognetti and Istituto di Biologia e Patologia Molecolari Del CNR, Dipartimento di Scienze Biochimiche "A. Rossi Fanelli", Sapienza Università di Roma, 00185, Rome, Italy. Electronic address:
Protein folding represents a vital process for any living organism. While significant insights have been gained from studying single-domain proteins, our current knowledge on the folding mechanisms of multidomain proteins remains relatively limited, primarily due to their inherent complexity. The principal aim of this review lies in summarizing the emerging view pertaining multi-domain folding, emphasizing their modular nature, which minimizes misfolding and facilitates evolutionary innovation.
View Article and Find Full Text PDFWater Res
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MOE Key Laboratory of Pollution Processes and Environmental Criteria/Tianjin Engineering Center of Environmental Diagnosis and Contamination Remediation, College of Environmental Science and Engineering, Nankai University, Tianjin 300350, PR China. Electronic address:
In aqueous environments, microplastics (MPs) undergo photoaging, releasing dissolved organic matter (DOM). Disinfection byproducts (DBPs) formation from natural organic matter (NOM) phototransformation has been reported. However, the impact of NOM on the photoaging of MPs (especially nitrogen-containing MPs) and subsequent nitrogenous DBPs (N-DBPs) formation remains unknown.
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