The sequences of alpha-helical coiled-coils and bundles are characterized by a specific pattern of hydrophobic and hydrophilic residues which is repeated every seven residues. Highly conserved breaks in this pattern frequently occur in segments of otherwise continuous heptad substructures. The hairpin bend of the ROP protein coincides with such a break and provides a model system for the study of the structural effects induced by heptad discontinuities. The structure of a ROP mutant which re-establishes a continuous heptad pattern, shows insignificant changes relative to the wild-type protein, as is also reflected in its conformational stability, spectroscopic properties and unfolding behaviour. Thus, formation of alpha-alpha-hairpin bends may occur both in the presence and absence of heptad breaks.
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http://dx.doi.org/10.1038/nsb1094-706 | DOI Listing |
ACS Appl Mater Interfaces
November 2024
School of Chemical Engineering, Chonnam National University, Gwangju 61186, Republic of Korea.
In this work, oleic acid (OA)-capped core-heptad-shell (CHS) nanocrystals (NCs) that exhibit multiple emissions achieved through downshifting and orthogonal upconversion are synthesized via layer-by-layer thermal decomposition. This method enables the downshifting process to be accommodated by doping ions in the inert space between two upconversion patterns (the core and fourth shell) and doping Ce/Tb or Ce/Eu ions in the NaGdF layer for the first time. These developed CHS NCs exhibit different emission colors via 980 and 800 nm orthogonal upconversion and downshifting emissions under 256 nm UV excitation in hexane solvent.
View Article and Find Full Text PDFCommun Mater
October 2024
School of Chemical Engineering, Faculty of Science, Engineering and Technology, The University of Adelaide, Adelaide, SA 5005 Australia.
Peptide surfactants have been extensively investigated with various applications in detergents, foods, and pharmaceutics due to their biodegradability, biocompatibility, and customizable structures. Traditional peptide surfactants are often designed in a head-to-tail fashion mimicking chemical surfactants. Alternatively, a side-by-side design pattern based on heptad repeats offers an approach to designing peptide surfactants.
View Article and Find Full Text PDFThe eukaryotic RNA polymerase II (Pol II) multi-protein complex transcribes mRNA and coordinates several steps of co-transcriptional mRNA processing and chromatin modification. The largest Pol II subunit, Rpb1, has a C-terminal domain (CTD) comprising dozens of repeated heptad sequences (Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7), each containing five phospho-accepting amino acids. The CTD heptads are dynamically phosphorylated, creating specific patterns correlated with steps of transcription initiation, elongation, and termination.
View Article and Find Full Text PDFCurr Biol
August 2024
Duke University, Department of Cell Biology, 308 Research Drive, Durham, NC 27705, USA. Electronic address:
Temperature can impact every reaction essential to a cell. For organisms that cannot regulate their own temperature, adapting to temperatures that fluctuate unpredictably and on variable timescales is a major challenge. Extremes in the magnitude and frequency of temperature changes are increasing across the planet, raising questions as to how the biosphere will respond.
View Article and Find Full Text PDFBiomacromolecules
August 2024
Department of Chemical Engineering, University of Virginia, Charlottesville, Virginia 22903, United States.
Coiled coils, commonly found in native proteins, are helical motifs important for mediating intermolecular interactions. While coiled coils are attractive for use in new therapies and biomaterials, the lack of enzymatic stability of naturally occurring l-peptides may limit their implementation in biological environments. d-peptides are of interest for biomedical applications as they are resistant to enzymatic degradation and recent reports indicate that stereochemistry-driven interactions, achieved by blending d- and l-peptides, yield access to a greater range of binding affinities and a resistance to enzymatic degradation compared to l-peptides alone.
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