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Composition and functional diversity of soil and water microbial communities in the rice-crab symbiosis system.
PLoS One
January 2025
Department of Earth and Environmental Sciences, California State University, Fresno, CA, United States of America.
Rice-crab co-culture is an environmentally friendly agricultural and aquaculture technology with high economic and ecological value. In order to clarify the structure and function of soil and water microbial communities in the rice-crab symbiosis system, the standard rice-crab field with a ring groove was used as the research object. High-throughput sequencing was performed with rice field water samples to analyze the species and abundance differences of soil bacteria and fungi.
View Article and Find Full Text PDFIntegrative phylogenetic analysis of the genus Episoriculus (Mammalia: Eulipotyphla: Soricidae).
PLoS One
January 2025
College of Life Sciences, Sichuan University, Chengdu, Sichuan, PR China.
Shrews in the genus Episoriculus are among the least-known mammals in China, where representatives occur mainly in the Himalayan and Hengduan mountains. We sequence one mitochondrial and three nuclear genes from 77 individuals referable to this genus, collect morphometric data for five shape and 11 skull measurements from 56 specimens, and use museum collections and GenBank sequences to analyze phylogenetic relationships between this and related genera in an integrated molecular and morphometric approach. Whereas historically anywhere from two to eight species have been recognized in this genus, we conclude that six (Episoriculus baileyi, E.
View Article and Find Full Text PDFLow functional change despite high taxonomic turnover characterizes the microbiome across a 2000-km salinity gradient.
Sci Adv
January 2025
Phycology Research Group, Department of Biology, Ghent University, Ghent, Belgium.
The green seaweed relies on associated bacteria for morphogenesis and is an important model to study algal-bacterial interactions. -associated bacteria exhibit high turnover across environmental gradients, leading to the hypothesis that bacteria contribute to the acclimation potential of the host. However, the functional variation of these bacteria in relation to environmental changes remains unclear.
View Article and Find Full Text PDFImmunoinfiltration Analysis of Mitochondrial Damage-Related Genes in Lung Adenocarcinoma and Construction of a Classification and Prognostic Model Integrated With WGCNA and Machine Learning Algorithms.
Cancer Med
January 2025
Department of Respiratory Medicine, The Second Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, People's Republic of China.
Background: Lung adenocarcinoma (LUAD) exhibits molecular heterogeneity, with mitochondrial damage affecting progression. The relationship between mitochondrial damage and immune infiltration, and Weighted Gene Co-expression Network Analysis (WGCNA)-derived biomarkers for LUAD classification and prognosis, remains unexplored.
Aims: The objective of our research is to identify gene modules closely related to the clinical stages of LUAD using the WGCNA method.
Genome-wide analyses of the NAC transcription factor gene family in provide valuable insights into the natural process of leaf senescence.
PeerJ
January 2025
Institute of Agricultural Engineering, Anhui Academy of Agricultural Sciences, Hefei, Anhui, China.
is a deciduous shrub or small tree. It is a popular ornamental plant because of its beautiful leaves, which change colour in autumn. This study revealed 116 genes within the genome of .
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