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| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC335727 | PMC |
| http://dx.doi.org/10.1073/pnas.58.3.931 | DOI Listing |
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Unravelling the genetic architecture of soybean tofu quality traits.
Mol Breed
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Institute of Plant Breeding, Seed Science and Population Genetics, University of Hohenheim, 70599 Stuttgart, Germany.
Unlabelled: Tofu is a popular soybean ( (L.) Merr.) food with a long tradition in Asia and rising popularity worldwide, including Central Europe.
View Article and Find Full Text PDFCandidate genes associated with low temperature tolerance in cucumber adult plants identified by combining GWAS & QTL mapping.
Stress Biol
December 2024
State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
Fruit quality and yield are reduced when cucumber (Cucumis sativus L.) plants are exposed to low temperature (LT) stress, yet, the inheritance and genes linked to cold tolerance in adult plants have not been reported yet. Here, the LT-tolerance of 120 cucumber accessions representing four ecotypes were evaluated by GWAS, and also, in 140 recombinant inbred lines (RILs) derived from a biparental cross.
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Wageningen University and Research Plant Breeding, Wageningen, The Netherlands.
Background: The allo-octoploid Fragaria x ananassa follows disomic inheritance, yet the high sequence similarity among its subgenomes can lead to misalignment of short sequencing reads (150 bp). This misalignment results in an increased number of erroneous variants during variant calling. To accurately associate traits with the appropriate subgenome, it is essential to filter out these erroneous variants.
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Am J Bot
November 2024
Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.
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View Article and Find Full Text PDFUtilization of a SNP microarray to detect uniparental disomy: Implications and outcomes.
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December 2024
Center for Molecular Biology and Pathology, Labcorp, Research Triangle Park, NC. Electronic address:
Article Synopsis
- - The study aimed to evaluate how effective single nucleotide polymorphisms (SNP) microarray analysis is for identifying uniparental disomy (UPD) using both trios (both parents) and duos (only one parent).
- - Results showed that the Mendelian Inheritance Error (MIE) values were distinct for UPD and biparental inheritance, with specific ranges indicating UPD in trios and high percentages of heterozygous SNPs (AB%) suggesting UPD in duos.
- - The findings highlight that SNP microarrays can effectively detect UPD, but there may be challenges in reliably identifying large homozygosity regions, affecting the overall effectiveness of UPD testing.
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