When predicting physical phenomena through simulation, quantification of the total uncertainty due to multiple sources is as crucial as making sure the underlying numerical model is accurate. Possible sources include irreducible uncertainty due to noise in the data, uncertainty induced by insufficient data or inadequate parameterization and uncertainty related to the use of misspecified model equations. In addition, recently proposed approaches provide flexible ways to combine information from data with full or partial satisfaction of equations that typically encode physical principles. Physics-based regularization interacts in non-trivial ways with aleatoric, epistemic and model-form uncertainty and their combination, and a better understanding of this interaction is needed to improve the predictive performance of physics-informed digital twins that operate under real conditions. To better understand this interaction, with a specific focus on biological and physiological models, this study investigates the decomposition of total uncertainty in the estimation of states and parameters of a differential system simulated with MC X-TFC, a new physics-informed approach for uncertainty quantification based on random projections and Monte Carlo sampling. After an introductory comparison between approaches for physics-informed estimation, MC X-TFC is applied to a six-compartment stiff ODE system, the CVSim-6 model, developed in the context of human physiology. The system is first analysed by progressively removing data while estimating an increasing number of parameters, and subsequently by investigating total uncertainty under model-form misspecification of nonlinear resistance in the pulmonary compartment. In particular, we focus on the interaction between the formulation of the discrepancy term and quantification of model-form uncertainty, and show how additional physics can help in the estimation process. The method demonstrates robustness and efficiency in estimating unknown states and parameters, even with limited, sparse and noisy data. It also offers great flexibility in integrating data with physics for improved estimation, even in cases of model misspecification.This article is part of the theme issue 'Uncertainty quantification for healthcare and biological systems (Part 1)'.
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http://dx.doi.org/10.1098/rsta.2024.0221 | DOI Listing |
Philos Trans A Math Phys Eng Sci
March 2025
Division of Applied Mathematics, Brown University, Providence, RI 02906, USA.
When predicting physical phenomena through simulation, quantification of the total uncertainty due to multiple sources is as crucial as making sure the underlying numerical model is accurate. Possible sources include irreducible uncertainty due to noise in the data, uncertainty induced by insufficient data or inadequate parameterization and uncertainty related to the use of misspecified model equations. In addition, recently proposed approaches provide flexible ways to combine information from data with full or partial satisfaction of equations that typically encode physical principles.
View Article and Find Full Text PDFPhilos Trans A Math Phys Eng Sci
March 2025
Centre for Mathematical Medicine & Biology, School of Mathematical Sciences, University of Nottingham, Nottingham NG7 2RD, UK.
Mathematical models of ion channel gating describe the changes in ion channel configurations due to the electrical activity of the cell membrane. Experimental findings suggest that ion channels behave randomly, and therefore stochastic models of ion channel gating should be more realistic than deterministic counterparts. Whole-cell voltage-clamp data allow us to calibrate the parameters of ion channel models.
View Article and Find Full Text PDFMolecules
February 2025
Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas, Serrano 113-bis, 28006 Madrid, Spain.
Total electron scattering cross sections (TCSs), in the energy range of 1-100 eV, have been measured with a high-resolution magnetically confined electron transmission apparatus, with total uncertainty limits estimated to be within ±5%. No previous experimental TCS data have been found for comparison. Electron attachment resonances, corresponding to transient negative ion formation, have been identified for energies below 20 eV by analyzing their contribution to the measured local maxima of the TCSs.
View Article and Find Full Text PDFAnal Bioanal Chem
March 2025
Grupo de Investigación en Metrología Química y Bioanálisis, Instituto Nacional de Metrología de Colombia, Av Carrera 50 No 26 - 55 Int. 2, Bogotá, D.C, Colombia.
In-house reference materials (ihRM) are an alternative to the limited supply of reference materials for method validation and assurance of the validity of pesticide residue results. Currently, limited information exists on producing ihRM of pesticide residues in food for laboratory testing purposes for the desired matrix/analyte/concentration combination. This study aimed to develop in-house reference materials for three food matrices: banana, rice, and green coffee spiked with a total of 22 pesticides, which were selected for their relevance in food matrices, with pK values ranging from -0.
View Article and Find Full Text PDFJ Psychosom Res
March 2025
School of Nursing, Wenzhou Medical University, Wenzhou, Zhejiang, China. Electronic address:
Objective: Current studies on psychosocial adaptation of persons with stroke mainly focused on the overall level and ignored its heterogeneity. The aim of the current study was to identify the latent profiles of psychosocial adaptation of persons with stroke and further explore their association with coping styles and illness uncertainty.
Methods: A total of 361 hospitalized persons with stroke were recruited at two affiliated hospitals of a medical university in southeastern China from October 2023 to March 2024.
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