We report the first high-quality genome-wide assembly for , the longest-lived non-colonial species, with a reported maximum life span of 507 years. The genome was assembled using short- and long-read DNA sequencing and RNA sequencing of four tissues. All assessment approaches indicated that the assembled genome is complete, contiguous, and accurate. The genome size is estimated at 1781.15 million base pairs (Mbps) with a coverage of 247.8×. The heterozygous rate was 1.15% and the repeat content 67.66%. Genome completeness evaluated by complete BUSCOs was 92.7%. The non-redundant gene set consisted of 39,509 genes with an average transcript length of 15,429 bp. More than 98% of the genes could be annotated across databases. Predicted non-coding RNAs included 801 miRNAs, 11,114 tRNAs, 909 rRNAs, and 349 snRNAs. The genome, along with the assembly of genomes from other clam species, sets the stage for elucidating the molecular basis for the convergence of extreme longevity across these bivalve species.
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Biosaf Health
December 2024
National Key Laboratory of Intelligent Tracking and Forecasting for Infectious Diseases, NHC Key Laboratory of Biosafety, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
Viral infectious clones (ICs) serve as robust platforms for studying viral biology and screening antiviral agents using reverse genetics. However, the molecular profiles and complex limitations of human coronaviruses (HCoVs) pose a challenge to ICs development. In this study, we report a novel platform to develop the ICs for HCoV-OC43-VR1558 using a one-step assembly method in yeast by transformation-associated recombination (TAR) technology.
View Article and Find Full Text PDFWellcome Open Res
February 2025
Syngenta International Research Station, Jealott's Hill, Berkshire, England, UK.
We present a genome assembly from a male specimen of (flea beetle; Arthropoda; Insecta; Coleoptera; Chrysomelidae). The genome sequence has a total length of 671.30 megabases.
View Article and Find Full Text PDFWellcome Open Res
February 2025
Natural History Museum, London, England, UK.
We present a genome assembly from a female (Coppice Mining Bee; Arthropoda; Insecta; Hymenoptera; Andrenidae). The genome sequence has a total length of 442.47 megabases.
View Article and Find Full Text PDFWellcome Open Res
February 2025
Natural History Museum, London, England, UK.
We present a genome assembly from a male (Dotted Footman; Arthropoda; Insecta; Lepidoptera; Erebidae). The genome sequence has a total length of 500.49 megabases.
View Article and Find Full Text PDFHortic Res
April 2025
Department of Horticulture, Hainan Institute of Northwest A&F University, Sanya 572024, China.
The genus , which includes both wild and cultivated species such as and , represents a diverse genetic pool with significant agricultural value. In this study, we present a high-quality, haplotype-resolved, chromosome-level genome assembly for s (hereinafter referred to as 'Deyangshi'), an autotetraploid wild species notable for its short juvenile phase, by integrating high-fidelity single-molecule, nanopore sequencing, and high-throughput chromosome conformation capture techniques. The assembled genome size is ~3.
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