Lawsone (2-hydroxy-1,4-naphthoquinone), also known as hennotannic acid, is a red-orange dye present in the leaves of the henna plant () having lots of biological activities. In this paper, we have investigated the structural basis of binding affinities of Lawsone towards two different targets namely, calf thymus DNA (CT-DNA) and protein bovine serum albumin (BSA) using experimental and computational approaches. This phytochemical binds to the minor groove of DNA and Sudlow site II, Domain III of BSA. The binding constants obtained from spectroscopic studies for Lawsone with DNA and BSA have been determined as 1.79 × 10³ M and 2.18 × 10³ M, respectively with corresponding Gibbs free energies of -4.46 kcal/mol and -4.58 kcal/mol. Conformational changes in the secondary structures of the receptors upon binding with Lawsone is observed. Isothermal titration calorimetry (ITC) experiments reveal that binding is favoured mainly due to negative enthalpy changes (-18.2 kcal/mol for DNA and -98.77 kcal/mol for BSA). Molecular docking and dynamics simulations elucidate intermolecular contacts between Lawsone and the receptors, providing insight into the energetic profile of the complexes and revealing Lawsone's reorientation within the binding sites. Both experimental and computational findings highlight the significance of hydrogen bonding and hydrophobic interactions in the binding process, offering valuable insights into Lawsone's molecular interactions with biomolecules and its potential therapeutic applications.
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http://dx.doi.org/10.1080/07391102.2025.2474060 | DOI Listing |
J Mol Model
March 2025
Faculty of Science, Engineering and Agriculture, University of Venda, University Road, Thohoyandou, 0950, South Africa.
Context: Malaria and cancer tend to become drug-resistant a few years after a drug is introduced into clinical use. This prompts the search for new molecular structures that are sufficiently different from the drugs for which resistance has developed. The present work considers eight selected acylphloroglucinols (ACPLs) with proven antimalarial and/or anticancer activities.
View Article and Find Full Text PDFMol Biol Cell
March 2025
Department of Biological Sciences, University of Illinois at Chicago, Chicago, IL 60607.
Specialized, maternally derived ribonucleoprotein (RNP) granules play an important role in specifying the primordial germ cells in many animal species. Typically, these germ granules are small (∼100 nm to a few microns in diameter) and numerous; in contrast, a single, extremely large granule called the oosome plays the role of germline determinant in the wasp The organizational basis underlying the form and function of this unusually large membraneless RNP granule remains an open question. Here we use a combination of super-resolution and transmission electron microscopy to investigate the composition and morphology of the oosome.
View Article and Find Full Text PDFNucleic Acids Res
February 2025
Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10-12, E-08028 Barcelona, Spain.
By combining in silico, biophysical, and in vitro experiments, we decipher the topology, physical, and potential biological properties of hybrid-parallel nucleic acids triplexes, an elusive structure at the basis of life. We found that hybrid triplex topology follows a stability order: r(Py)-d(Pu)·r(Py) > r(Py)-d(Pu)·d(Py) > d(Py)-d(Pu)·d(Py) > d(Py)-d(Pu)·r(Py). The r(Py)-d(Pu)·d(Py) triplex is expected to be preferred in the cell as it avoids the need to open the duplex reducing the torsional stress required for triplex formation in the r(Py)-d(Pu)·r(Py) topology.
View Article and Find Full Text PDFNucleic Acids Res
February 2025
Protein-Nucleic Acid Interaction Section, Center for Structural Biology, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, United States.
Synthetic RNA devices are engineered to control gene expression and offer great potential in both biotechnology and clinical applications. Here, we present multidisciplinary structural and biochemical data for a tetracycline (Tc)-responsive RNA device (D43) in both ligand-free and bound states, providing a structure-dynamical basis for signal transmission. Activation of self-cleavage is achieved via ligand-induced conformational and dynamical changes that stabilize the elongated bridging helix harboring the communication module, which drives proper coordination of the catalytic residues.
View Article and Find Full Text PDFAppl Environ Microbiol
March 2025
School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan, China.
Unlabelled: The diversity patterns and drivers of soil microbial communities across spatial distances have been extensively investigated over the recent years. However, whether microbial communities in surface and subsurface soils showed an identical spatial distribution pattern at a small regional scale has not been fully confirmed. For this, we investigated the linkage between soil water content (SWC), pH as well as nutrient contents and soil bacterial diversity and communities in different soil layers in the Longmenshan fault zone in Sichuan Province, China.
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