Four analogs of geranylgeranyl diphosphate (GGPP) with shifted double bonds were synthesised and enzymatically converted with 14 diterpene synthases of previously reported function, including two newly characterised homologs of the benditerpe-2,6,15-triene synthase Bnd4 and the venezuelaene synthase VenA. In successful cases the products were isolated and structurally characterised by NMR spectroscopy, revealing the formation of various diterpenoids with skeletons that have not been reported from natural sources. Isotopic labelling experiments in conjunction with DFT calculations were performed to give insights into hydride migrations in the biosynthesis of the non-natural diterpenes benditerpe-2,7(19),15-triene and venezuelaxenene and their natural counterparts from GGPP.
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http://dx.doi.org/10.1002/chem.202500712 | DOI Listing |
Chemistry
March 2025
University of Bonn: Rheinische Friedrich-Wilhelms-Universitat Bonn, Kekulé Institute for Organic Chemistry and Biochemistry, Gerhard-Domagk-Straße 1, 53121, Bonn, GERMANY.
Four analogs of geranylgeranyl diphosphate (GGPP) with shifted double bonds were synthesised and enzymatically converted with 14 diterpene synthases of previously reported function, including two newly characterised homologs of the benditerpe-2,6,15-triene synthase Bnd4 and the venezuelaene synthase VenA. In successful cases the products were isolated and structurally characterised by NMR spectroscopy, revealing the formation of various diterpenoids with skeletons that have not been reported from natural sources. Isotopic labelling experiments in conjunction with DFT calculations were performed to give insights into hydride migrations in the biosynthesis of the non-natural diterpenes benditerpe-2,7(19),15-triene and venezuelaxenene and their natural counterparts from GGPP.
View Article and Find Full Text PDFCell Rep
March 2025
Center for Cell Structure and Function, Shandong Provincial Key Laboratory of Animal Resistance Biology, Collaborative Innovation Center of Cell Biology in Universities of Shandong, College of Life Sciences, Shandong Normal University, Jinan 250358, China. Electronic address:
Inflammation is a crucial element of immune responses, with pivotal roles in host defenses against pathogens. Comprehensive understanding of the molecular mechanisms underlying inflammation is imperative for developing effective strategies to combat infectious diseases. Here, we conducted a screening analysis and identified enkurin domain-containing protein 1 (ENKD1) as a promising regulator of inflammation.
View Article and Find Full Text PDFBioorg Med Chem
February 2025
Department of Internal Medicine, University of Nebraska Medical Center, Omaha, NE 68198, USA; Fred and Pamela Buffett Cancer Center, University of Nebraska Medical Center, Omaha, NE 68198, USA. Electronic address:
Geranylgeranyl diphosphate synthase (GGDPS) produces the 20-carbon isoprenoid species used in protein geranylgeranylation reactions. Inhibition of GGDPS has emerged as a novel means of disrupting the activity of geranylgeranylated proteins in cancers such as myeloma and osteosarcoma. We have focused on developing a series of isoprenoid triazole bisphosphonate-based GGDPS inhibitors, demonstrating a complex structure-activity relationship (SAR), not only at the enzymatic level, but also at the cellular and whole organism levels.
View Article and Find Full Text PDFBioconjug Chem
March 2025
Department of Chemistry, Syracuse University, 111 College Place, Syracuse, New York 13244, United States.
Geranylgeranylation is a critical post-translational modification essential for various cellular functions. However, current methods for synthesizing geranylgeranylated proteins are complex and costly, which hinders access to these proteins for both biophysical and biomaterials applications. Here, we present a method for the one-pot production of geranylgeranylated proteins in .
View Article and Find Full Text PDFDrug Metab Dispos
January 2025
Department of Internal Medicine, University of Nebraska Medical Center, Omaha, Nebraska. Electronic address:
Geranylgeranyl diphosphate synthase produces the isoprenoid geranylgeranyl diphosphate, which is used in protein geranylgeranylation. Our previous work illustrates that geranylgeranyl diphosphate synthase inhibitors (GGSIs) disrupt Rab-mediated protein trafficking in cells, inducing the unfolded protein response pathway and apoptosis. Structure-function studies of our GGSIs, which are isoprenoid triazole bisphosphonates, have revealed a complex relationship between GGSI structure and enzymatic, cellular, and in vivo activities.
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