Birth-death models are used to understand the interplay of genetic drift and natural selection. While well-mixed populations remain unaffected by the order of birth and death and where selection acts, evolutionary outcomes in spatially structured populations are affected by these choices. We show that the choice of individual moving to vacant sites-parent or offspring-controls the initial mutant placement on a graph and hence alters its fixation probability. Moving parent individuals introduces, to our knowledge, previously unexplored update rules and fixation categories for heterogeneous graphs. We identify a class of graphs, amplifiers of fixation, where fixation probability is larger than in well-mixed populations, regardless of the mutant fitness. Under death-Birth parent moving, the star graph is an amplifier of fixation, with a non-zero fixation probability for deleterious mutants, in contrast to very large well-mixed populations. Most Erdős-Rényi graphs of size 8 are amplifiers of fixation under death-Birth parent moving, but suppressors of fixation under Birth-death offspring moving. Surprisingly, amplifiers of fixation attain lower fitness in long-term evolution, despite favouring beneficial mutants, while suppressors of fixation attain higher fitness. These counterintuitive findings are explained by the fate of deleterious mutations and highlight the crucial role of deleterious mutants for adaptive evolution.
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http://dx.doi.org/10.1038/s41467-025-57552-9 | DOI Listing |
Nat Commun
March 2025
Department of Theoretical Biology, Max Planck Institute for Evolutionary Biology, Plön, Germany.
Birth-death models are used to understand the interplay of genetic drift and natural selection. While well-mixed populations remain unaffected by the order of birth and death and where selection acts, evolutionary outcomes in spatially structured populations are affected by these choices. We show that the choice of individual moving to vacant sites-parent or offspring-controls the initial mutant placement on a graph and hence alters its fixation probability.
View Article and Find Full Text PDFbioRxiv
February 2025
Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA.
When it comes to understanding the role that population structure plays in shaping rates of evolution, it is commonly accepted that interference between evolutionary innovations is more prevalent in structured populations compared to well-mixed, and that population structure reduces the rate of evolution, while simultaneously promoting maintenance of genetic variation. Prior models usually represent population structure using two or more connected demes or lattices with periodic boundary conditions. Fundamentally, the observed spatial evolutionary slow-down is rooted in the fact that these types of structures increase the time it takes for a selective sweep and therefore, increase the probability that multiple beneficial mutations will coexist and interfere.
View Article and Find Full Text PDFSci Rep
February 2025
Surface Reaction and Advanced Energy Materials Laboratory, Department of Chemical Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran, Iran.
A population balance-based model was developed to describe the crystallization kinetics of the SAPO-34 zeotype through the hydrothermal method at three distinct temperatures of 180, 200, and 220 °C. The synthesized SAPO-34 catalysts were characterized by XRD, FESEM, BET, and DLS analysis. The model was constructed based on XRD patterns and incorporated established kinetic expressions for homogeneous nucleation and diffusion-controlled crystal growth.
View Article and Find Full Text PDFInfect Dis Model
June 2025
Institute of Software Technology, Department of High-Performance Computing, German Aerospace Center, Cologne, Germany.
Emerging infectious diseases and climate change are two of the major challenges in 21st century. Although over the past decades, highly-resolved mathematical models have contributed in understanding dynamics of infectious diseases and are of great aid when it comes to finding suitable intervention measures, they may need substantial computational effort and produce significant CO emissions. Two popular modeling approaches for mitigating infectious disease dynamics are agent-based and population-based models.
View Article and Find Full Text PDFChaos
February 2025
School of Mathematical Science, Dalian University of Technology, Dalian 116024, China.
When the number of cooperators does not reach the collective target, resulting in the collective risk social dilemma, the self-organizing behavior of the group leads to the loss of collective interest and the government intervention leads to the increase of collective interest. For these two situations, we study the evolution of cooperation under threshold public goods game in well-mixed population. The results show that the introduction of the threshold makes it possible to generate complex dynamics with two interior equilibria in the replication equation.
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