Using a recently published scRNA-seq dataset of adult hermaphrodites, we identified a previously unknown regulator of the germ line stem cell niche (the distal tip cell, or DTC). The gene has the highest "marker score"-yet no known role-in the DTC. Using classical genetics techniques, RNAi knockdown, and live cell imaging, we discovered that integrates information from the Wnt and Netrin pathways to guide anteroposterior and dorsoventral DTC migration. Our study demonstrates the utility of scRNA-seq datasets in revealing testable hypotheses about genetic networks that were masked by redundancy in traditional screening methods.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11888322PMC
http://dx.doi.org/10.1101/2025.02.24.639896DOI Listing

Publication Analysis

Top Keywords

wnt netrin
8
published scrna-seq
8
mig-21 novel
4
novel regulator
4
regulator wnt
4
netrin signaling
4
signaling gonad
4
gonad migration
4
migration identified
4
identified published
4

Similar Publications

Using a recently published scRNA-seq dataset of adult hermaphrodites, we identified a previously unknown regulator of the germ line stem cell niche (the distal tip cell, or DTC). The gene has the highest "marker score"-yet no known role-in the DTC. Using classical genetics techniques, RNAi knockdown, and live cell imaging, we discovered that integrates information from the Wnt and Netrin pathways to guide anteroposterior and dorsoventral DTC migration.

View Article and Find Full Text PDF

Bisphenol S interrupted axonogenesis on a human embryonic stem cells derived neural differentiation model: Conserved axon guidance and WNT signaling pathway involved.

Ecotoxicol Environ Saf

February 2025

West China School of Public Health and West China Fourth Hospital, Sichuan University, Chengdu, China; Food Safety Monitoring and Risk Assessment Key Laboratory of Sichuan Province, Chengdu, China. Electronic address:

Bisphenol S (BPS) is the main substitute for bisphenol A (BPA). However, the neurodevelopmental toxicity of BPS and the underlying mechanisms remain unraveled. In present study, the neuro-differentiating human embryonic stem cells, hESC, was exposed to BPS (0-375 µM) at different stages (the precursor stage, the precursor to maturation stage, and the whole differentiation stage) to assess the potential neurodevelopmental toxicity and its mechanisms.

View Article and Find Full Text PDF

Introduction: Understanding the molecular signals associated with the progression of kidney disease is vital for risk stratification and targeted treatment. Recent advances in RNA-sequencing technique have enabled us to characterize extracellular transcriptome profiles for precision diagnostics.

Method: We evaluated the plasma mRNA profile of participants exhibiting slow (n = 119) and fast (n = 119) decline in estimated glomerular filtration rate (eGFR) among the Chronic Renal Insufficiency Cohort (CRIC) in a nested case control study.

View Article and Find Full Text PDF

The integrity of the blood-retina barrier (BRB) is crucial for phototransduction and vision, by tightly restricting transport of molecules between the blood and surrounding neuronal cells. Breakdown of the BRB leads to the development of retinal diseases. Here, we show that Netrin-1/Unc5b and Norrin/Lrp5 signaling establish a zonated endothelial cell gene expression program that controls BRB integrity.

View Article and Find Full Text PDF

The Sonic hedgehog (SHh) signaling pathway is an imperative operating network that helps in regulates the critical events during the development processes like multicellular embryo growth and patterning. Disruptions in SHh pathway regulation can have severe consequences, including congenital disabilities, stem cell renewal, tissue regeneration, and cancer/tumor growth. Activation of the SHh signal occurs when SHh binds to the receptor complex of Patch (Ptc)-mediated Smoothened (Smo) (Ptc-smo), initiating downstream signaling.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!