Using a recently published scRNA-seq dataset of adult hermaphrodites, we identified a previously unknown regulator of the germ line stem cell niche (the distal tip cell, or DTC). The gene has the highest "marker score"-yet no known role-in the DTC. Using classical genetics techniques, RNAi knockdown, and live cell imaging, we discovered that integrates information from the Wnt and Netrin pathways to guide anteroposterior and dorsoventral DTC migration. Our study demonstrates the utility of scRNA-seq datasets in revealing testable hypotheses about genetic networks that were masked by redundancy in traditional screening methods.
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http://dx.doi.org/10.1101/2025.02.24.639896 | DOI Listing |
Using a recently published scRNA-seq dataset of adult hermaphrodites, we identified a previously unknown regulator of the germ line stem cell niche (the distal tip cell, or DTC). The gene has the highest "marker score"-yet no known role-in the DTC. Using classical genetics techniques, RNAi knockdown, and live cell imaging, we discovered that integrates information from the Wnt and Netrin pathways to guide anteroposterior and dorsoventral DTC migration.
View Article and Find Full Text PDFEcotoxicol Environ Saf
February 2025
West China School of Public Health and West China Fourth Hospital, Sichuan University, Chengdu, China; Food Safety Monitoring and Risk Assessment Key Laboratory of Sichuan Province, Chengdu, China. Electronic address:
Bisphenol S (BPS) is the main substitute for bisphenol A (BPA). However, the neurodevelopmental toxicity of BPS and the underlying mechanisms remain unraveled. In present study, the neuro-differentiating human embryonic stem cells, hESC, was exposed to BPS (0-375 µM) at different stages (the precursor stage, the precursor to maturation stage, and the whole differentiation stage) to assess the potential neurodevelopmental toxicity and its mechanisms.
View Article and Find Full Text PDFAm J Nephrol
December 2024
Division of Renal Diseases and Hypertension, George Washington University, Washington, DC, USA.
Introduction: Understanding the molecular signals associated with the progression of kidney disease is vital for risk stratification and targeted treatment. Recent advances in RNA-sequencing technique have enabled us to characterize extracellular transcriptome profiles for precision diagnostics.
Method: We evaluated the plasma mRNA profile of participants exhibiting slow (n = 119) and fast (n = 119) decline in estimated glomerular filtration rate (eGFR) among the Chronic Renal Insufficiency Cohort (CRIC) in a nested case control study.
Proc Natl Acad Sci U S A
December 2024
Paris Cardiovascular Research Center, Université Paris Cité, Inserm U970, Paris F-75015, France.
The integrity of the blood-retina barrier (BRB) is crucial for phototransduction and vision, by tightly restricting transport of molecules between the blood and surrounding neuronal cells. Breakdown of the BRB leads to the development of retinal diseases. Here, we show that Netrin-1/Unc5b and Norrin/Lrp5 signaling establish a zonated endothelial cell gene expression program that controls BRB integrity.
View Article and Find Full Text PDFDev Biol
December 2023
Chitkara College of Pharmacy, Chitkara University, Rajpura, 140401, Punjab, India. Electronic address:
The Sonic hedgehog (SHh) signaling pathway is an imperative operating network that helps in regulates the critical events during the development processes like multicellular embryo growth and patterning. Disruptions in SHh pathway regulation can have severe consequences, including congenital disabilities, stem cell renewal, tissue regeneration, and cancer/tumor growth. Activation of the SHh signal occurs when SHh binds to the receptor complex of Patch (Ptc)-mediated Smoothened (Smo) (Ptc-smo), initiating downstream signaling.
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