As a primary approach to address feature selection problems, evolutionary algorithms have been widely proposed to deal with the problem. Most of these methods are designed to find a single feature subset. However, the optimal feature subset within a dataset is often not unique, indicating that feature selection exhibits multimodal characteristics. Representing data information with a single feature subset will be biased. Nevertheless, most existing evolutionary algorithms suffered from a lack of diversity, making them insufficiently effective in finding multiple optimal solutions. To address this issue, this paper investigates a new evolutionary algorithm derived from the Heterosis theory, the hybrid breeding optimization algorithm (HBO). Additionally, HBO is incorporated with dynamic niching technology and a double-stage multimodal hybrid breeding optimization (DSMHBO) is proposed. Further, to enhance the performance of the traditional HBO, neighborhood search and elite mutation strategies are introduced in the global search, and a neighborhood crossover strategy is applied to broaden the diversity of population. When the number of niches is set to 1, DSMHBO is equivalent to the double-stage hybrid breeding optimization (DSHBO). Finally, eight algorithms such as DSHBO, cuckoo search (CS), fruit fly algorithm (FA) are compared over 13 datasets. DSHBO achieves the best average classification accuracy (ACA) on 7 datasets and the best highest classification accuracy (HCA) on 10 datasets, significantly surpassing the comparison algorithms. In addition, the proposed DSMHBO is compared with newly proposed algorithms, such as whale optimization algorithm (WOA) and Harris hawk optimization algorithm(HHO) over 10 datasets. DSMHBO achieved average ACA and HCA values of 93.54% and 95.52%, much higher than the comparison models. It also can identify up to 187 feature subsets on the Lung Cancer dataset, which indicates its ability to locate multiple peaks. Moreover, even as the error level increases, the global search capability of DSMHBO remains superior to other algorithms, proving that DSMHBO is an effective method for multimodal feature selection.
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http://dx.doi.org/10.1038/s41598-024-78758-9 | DOI Listing |
G3 (Bethesda)
March 2025
Department of Agronomy, Kansas State University, Manhattan, KS, 66506, USA.
Allele mining of crop pangenomes can enable the identification of novel variants for trait improvement, increase crop genetic diversity, and purge deleterious mutations around fixed genomic regions. Sorghum, a C4 cereal crop domesticated in the tropics, was selected for reduced plant height and maturity to develop combine-harvestable and photoperiod-insensitive US grain sorghums. To breed semi-dwarf US grain sorghum hybrids, public and private sector programs mostly used the dw3-ref allele, which produces undesirable height revertants (frequency of 0.
View Article and Find Full Text PDFFront Plant Sci
February 2025
State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Bamboo Research Institute, Key Laboratory of National Forestry and Grassland Administration on Subtropical Forest Biodiversity Conservation, School of Life Sciences, Nanjing Forestry University, Nanjing, Jiangsu, China.
Dirigent (DIR) proteins are key regulators of lignin and lignan biosynthesis and play critical roles in plant hormone responses, abiotic stress tolerance, and growth and development. This study identified and characterized 47 genes in Moso bamboo, classifying them into three groups. Phylogenetic and comparative analyses revealed strong evolutionary conservation, with the Moso bamboo genes being most closely related to those in rice and maize.
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February 2025
Laboratorio de Genómica y Bioinformática, Universidad Nacional Agraria la Molina (UNALM), Lima, Peru.
Peruvian maize exhibits abundant morphological diversity, with landraces cultivated from sea level (sl) up to 3,500 m above sl. Previous research based on morphological descriptors, defined at least 52 Peruvian maize races, but its genetic diversity and population structure remains largely unknown. Here, we used genotyping-by-sequencing (GBS) to obtain single nucleotide polymorphisms (SNPs) that allow inferring the genetic structure and diversity of 423 maize accessions from the genebank of Universidad Nacional Agraria la Molina (UNALM) and Universidad Nacional Autónoma de Tayacaja (UNAT).
View Article and Find Full Text PDFCurr Microbiol
March 2025
National Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, 430072, China.
A Gram-stain-negative, strictly aerobic, rod-shaped, and no flagella, designated SLMDC-22, was isolated from the intestine of a mud crab (Scylla serrata). The molecular phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SLMDC-22 belonged to the genus Polaribacter and exhibited 96.9% similarity to P.
View Article and Find Full Text PDFSci Rep
March 2025
Institute of Plant Genetics and Biotechnology, Plant Science and Biodiversity Centre SAS, Akademická 2, 950 07, Nitra, Slovak Republic.
This study explores the population structure, hybridization, and adaptation of Juniperus communis sensu lato in the context of its current habitat fragmentation, using inter-primer binding site markers and needle morphometry. Three native juniper taxa in Slovakia were analyzed: J. communis ssp.
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