Here, we describe the applicability of a variety of functionalized magnetic beads (MBs) for DNA extraction under different lysis conditions. Various MBs, including hydroxyl, carboxylic, amino, chitosan-modified, and streptomycin-modified MBs (MBs-STR), were compared based on their extracted DNA quantity and quality. The results presented that the MBs exhibited different DNA adsorption capacities under specific conditions. Notably, MBs-STR maintained stable DNA adsorption capacity upon different conditions through a non-intercalative binding mechanism between STR and DNA minor groove. This discovery advances antibiotic-based DNA extraction strategies, offering a flexible, efficient alternative for biomedical applications while enriching the toolkit for nucleic acid isolation.
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http://dx.doi.org/10.1016/j.ab.2025.115836 | DOI Listing |
PLoS One
March 2025
Department of Medicine, University of Wisconsin Hospitals and Clinics, Madison, Wisconsin, United States of America.
Introduction: Infectious diarrheal diseases are one of the leading causes of worldwide morbidity and mortality. The incidence of diarrhea is higher in Low-Middle-Income Countries (LMIC), where more than 90% of deaths from diarrheal diseases occur. Diagnostic tests for infectious diarrhea are not readily available in Low-Middle-Income Countries.
View Article and Find Full Text PDFNanomaterials (Basel)
February 2025
Food Control Department, Faculty of Veterinary Medicine, Zagazig University, Zagazig 44511, Egypt.
The rise of multidrug-resistant (MDR) bacteria in food products poses a significant threat to public health, necessitating innovative and sustainable antimicrobial solutions. This study investigates the green synthesis of zinc oxide nanoparticles (ZnO-NPs) using extracts to evaluate their antibacterial and antibiofilm activities against MDR strains isolated from sold fish samples. The obtained results show that the contamination with reached 54.
View Article and Find Full Text PDFBiotechniques
March 2025
McMaster Ancient DNA Centre, McMaster University, Hamilton, Canada.
Archival fixed tissues hold key insights into the evolutionary history of RNA viruses and the associated host immune response, yet access to the RNA sequence data is limited by a lack of robust methods for RNA extraction and sequence retrieval from these tissue types. Here we compared three commercial RNA extraction techniques (bead, column, and phase-based) on five fixed human brain tissues done in triplicate, that have been stored for up to 43 years. We found that for this sample set, bead-based extractions captured longer molecules and yielded a greater proportion of unique reads when aligned to the human genome, than did column and phase-based extraction methods.
View Article and Find Full Text PDFJ Vet Diagn Invest
March 2025
Department of Veterinary Medicine and Animal Production, University of Naples Federico II, Naples, Italy.
Gibber Italicus, song thrush (), and redwing () are 3 bird species in which sexual dimorphism is not readily apparent. Therefore, molecular sexing is a valuable tool for breeding, selection, and conservation purposes. We compared DNA extraction by commercial kit and an alkaline method from feathers, then developed a molecular method for sexing these species using the P2/P8 and CHD1F/CHD1R primer pairs.
View Article and Find Full Text PDFBalkan J Med Genet
December 2024
Department of Nursing, College of Nursing and Health Sciences, Jazan University, Jazan - 45142, Saudi Arabia.
The complex cytokine network plays an important role in disease susceptibility and development, therefore single-nucleotide polymorphisms (SNPs) in or near cytokine genes may be relevant to development of systemic sclerosis (SSc). We in this study investigated 22 SNPs in 13 cytokine genes of SSc patients, and their association with disease susceptibility. Twenty-three clinically diagnosed SSc patients were enrolled for this purpose along with 80 healthy volunteers for comparisons.
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