Graph similarity estimation is a challenging task due to the complex graph structures. Though important and well-studied, three critical aspects are yet to be fully handled in a unified framework: 1) how to learn richer cross-graph interactions from a pairwise node perspective; 2) how to map the similarity matrix into a similarity score by exploiting the inherent structure in the similarity matrix; and 3) how to establish a self-supervised learning mechanism for graph similarity learning. To solve these issues, we explore multiple attention and self-supervised mechanisms for graph similarity learning in this work. More specifically, we propose a unified self-supervised nodewise attention-guided graph similarity learning framework (SNA-GSL) involving: 1) a correlation-guided contrastive learning for capturing valuable node embeddings and 2) a graph similarity learning for predicting similarity scores with multiple proposed attention mechanisms. Extensive experimental results on graph-graph regression task and graph classification task demonstrate that the proposed SNA-GSL performs favorably against state-of-the-art methods. Moreover, the remarkable achievement of our model in the graph classification task is a clear indication of its exceptional generalization capabilities. The code is available at https://github.com/IntelliDAL/Graph/SNA-GSL.
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http://dx.doi.org/10.1109/TNNLS.2024.3513546 | DOI Listing |
J Chem Inf Model
March 2025
School of Computer Engineering and Science, Shanghai University, Shanghai 200444, China.
The goal of drug repositioning is to expedite the drug development process by finding novel therapeutic applications for approved drugs. Using multifeature learning, different computational drug repositioning techniques have recently been introduced to predict possible drug-disease relationships. Nevertheless, current graph-based methods tend to model drug-disease interaction relationships without considering the semantic influence of node-specific side information on graphs.
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Predicting gene-disease associations is essential for understanding disease pathogenesis and determining therapeutic targets. While prior methods have integrated diverse biological information to make predictions, they still encounter several challenges. First, incomplete and sparse gene-disease association data constrain model performance.
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March 2025
This paper presents a Task-Free eye-tracking dataset for Dynamic Point Clouds (TF-DPC) aimed at investigating visual attention. The dataset is composed of eye gaze and head movements collected from 24 participants observing 19 scanned dynamic point clouds in a Virtual Reality (VR) environment with 6 degrees of freedom. We compare the visual saliency maps generated from this dataset with those from a prior task-dependent experiment (focused on quality assessment) to explore how high-level tasks influence human visual attention.
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March 2025
One of the pleasures of interacting using avatars in VR is being able to play a character very different to yourself. As the scale of characters change relative to a user, there is a need to retarget user motions onto the character, generally maintaining either the user's pose or the position of their wrists and ankles. This retargeting can impact both the functional and social information conveyed by the avatar.
View Article and Find Full Text PDFBrief Bioinform
March 2025
College of Computer Science and Technology, 79 Yingze West Avenue, Wanbailin District, Taiyuan University of Technology, Taiyuan, Shanxi Province 030024, China.
High-throughput sequencing technologies have facilitated a deeper exploration of prognostic biomarkers. While many deep learning (DL) methods primarily focus on feature extraction or employ simplistic fully connected layers within prognostic modules, the interpretability of DL-extracted features can be challenging. To address these challenges, we propose an interpretable cancer prognosis model called Cox-Sage.
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