Surrogate-assisted evolutionary algorithms (SAEAs) are extensively used to tackle expensive optimization problems (EOPs). The integration of surrogate-based global and local search is a prevalent hierarchical SAEA framework, which can effectively balance exploration and exploitation capabilities. However, it still faces challenges when tackling high-dimensional EOPs (HEOPs) owing to the curse of dimensionality. In this article, we propose a hierarchical surrogate-assisted differential evolution with core space localization (HSADE-CS) to solve HEOPs. Its contributions are listed as follows: 1) a top-promising sampling strategy is introduced in the global search to mitigate the challenges posed by the uncertainty in the performance of the surrogate model; 2) a core space localization (CSL) method is proposed to identify a high-potential space within the local promising region, enhancing the effectiveness of local search; and 3) a fitness-independent adaptive parameter control method based on the Minkowski distance is developed within the differential evolution (DE) optimizer to improve the performance of surrogate model-driven local search. The performance of HSADE-CS has been validated on numerous benchmark problems from the commonly used expensive optimization benchmark suite, as well as the CEC2014 and CEC2017 benchmark suites, with problem dimensions up to 500. It has also been tested on a real-world problem, i.e., circular antenna array design optimization. Experimental results demonstrate that HSADE-CS is highly competitive compared to the state-of-the-art SAEAs.
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http://dx.doi.org/10.1109/TCYB.2024.3489885 | DOI Listing |
R Soc Open Sci
March 2025
UAV Technology Research Institute, Beijing 100074, People's Republic of China.
Coordination serves as a crucial metric for analysing collective behaviour in complex systems. Given the prevalence of biological diversity, this study re-evaluated the coordination issue in strictly metric-free (SMF) swarms, incorporating both limited perceptual ranges and hierarchical dynamics. Initially, the study introduced a single-layer hierarchical SMF model that was optimized using differential evolution strategies.
View Article and Find Full Text PDFHortic Res
April 2025
Department of Horticulture, Hainan Institute of Northwest A&F University, Sanya 572024, China.
The genus , which includes both wild and cultivated species such as and , represents a diverse genetic pool with significant agricultural value. In this study, we present a high-quality, haplotype-resolved, chromosome-level genome assembly for s (hereinafter referred to as 'Deyangshi'), an autotetraploid wild species notable for its short juvenile phase, by integrating high-fidelity single-molecule, nanopore sequencing, and high-throughput chromosome conformation capture techniques. The assembled genome size is ~3.
View Article and Find Full Text PDFInt J Mol Sci
March 2025
Department of Anesthesiology and Perioperative Care, Mayo Clinic, Rochester, MN 55905, USA.
The immune system's response to an invading pathogen is the critical determinant in recovery from illness. Here, we hypothesize that the immune response will swiftly follow classical activation and a resolution trajectory in patients with the rapid evolution of symptoms if challenged by a viral pathogen for the first time. Alternatively, a dysregulated response will be signified by a protracted clinical trajectory.
View Article and Find Full Text PDFInt J Mol Sci
March 2025
Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, College of Life Sciences, Shihezi University, Shihezi 832003, China.
() are a gene family that relies on NAD +/NADP + proteins to oxidize toxic aldehydes to non-toxic carboxylic acids, and they play a crucial role in the growth and development of plants, as well as in their ability to withstand stress. This study identified 26 genes from six gene families distributed on six chromosomes. By analyzing the phylogeny, gene structure, conserved motifs, cis-regulatory elements, collinearity of homologs, evolutionary patterns, differentiation patterns, and expression variations under drought stress, we found that the gene is involved in phytohormones and exhibits responsiveness to various environmental stressors by modulating multiple cis-regulatory elements.
View Article and Find Full Text PDFInt J Mol Sci
March 2025
Immunopathology and Cancer Biomarkers Unit, Centro di Riferimento Oncologico di Aviano (CRO), Istituto di Ricovero e Cura a Carattere Scientifico (IRCCS), 33081 Aviano, Italy.
Ovarian cancer (OC) is a highly heterogeneous malignancy, often characterized by complex genomic alterations that drive tumor progression and therapy resistance. In this paper, we report a novel de novo germline variant NM_000059.3:c.
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