Azamethiphos (AZA), an organophosphate pesticide, is well-known for its cholinesterase inhibition and associated toxic risks to non-target organisms. Its high-water solubility facilitates environmental contamination and persistence, increasing the risk of human exposure through bioaccumulation in agricultural products. This study investigates AZA's DNA-binding potential and underlying interaction mechanisms. Using in silico techniques, we analyzed AZA's interactions with DNA, revealing that hydrogen bonding plays a crucial role in stabilizing the AZA-DNA complex. The study found that AZA preferentially binds to AT-rich regions of Ct-DNA, suggesting it acts as a groove binder by fitting into the grooves of the DNA double helix Additionally, fluorescence spectroscopy studies of AZA with DNA were conducted at three temperatures (288 K, 298 K, and 308 K). These experiments demonstrated that AZA binds to Ct-DNA with a moderate binding affinity (3.868, 2.238 and 0.0061 x 10 LM at 288, 298 and 308 K respectively). Thermodynamic analysis confirmed the binding process is spontaneous (ΔG < 0), enthalpy driven (ΔH < 0, ΔS < 0) and facilitated by the presence of hydrogen bonds and van der Waals. These findings provide molecular-level insights into AZA's interactions with Ct-DNA, emphasizing its potential effects on genetic material. Understanding these interactions is crucial for assessing AZA's biological risks.
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http://dx.doi.org/10.1016/j.saa.2025.125934 | DOI Listing |
Antioxid Redox Signal
March 2025
Université de Lorraine, CNRS, IMoPA, F-54000 Nancy, France.
Peroxiredoxins (Prx) are ubiquitous Cys peroxidases regulated by sulfinylation, a modification that occurs when the sulfenic acid generated on the catalytic Cys by peroxide reduction reacts with a second molecule of peroxide. In the Prx1 family, sulfinylation sensitivity is controlled by competition between a structural transition from a fully folded (FF) to locally unfolded (LU) conformation and the chemical step of sulfinylation. The initial peroxide reduction relies on a conserved catalytic hydroxylated residue that allows peroxide optimal activation.
View Article and Find Full Text PDFJ Chem Theory Comput
March 2025
Theoretical Molecular Science Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama 351-0198, Japan.
Machine learning (ML) methods have emerged as an efficient surrogate for high-level electronic structure theory, offering precision and computational efficiency. However, the vast conformational and chemical space remains challenging when constructing a general force field. Training data sets typically cover only a limited region of this space, resulting in poor extrapolation performance.
View Article and Find Full Text PDFBr J Pharmacol
March 2025
Department of Biochemistry and Biophysics, Science for Life Laboratory, Stockholm University, Solna, Sweden.
Background And Purpose: Allosteric modulation of pentameric ligand-gated ion channels (pLGICs) are critical for the action of neurotransmitters and many psychoactive drugs. However, details of their modulatory mechanisms remain unclear, especially beyond the orthosteric neurotransmitter-binding sites. The recently reported prokaryotic symbiont of Tevnia jerichonana ligand-gated ion channel (sTeLIC), a pH-gated homologue of eukaryotic receptors in the pLGIC family, is thought to be modulated by aromatic compounds via a relatively uncharacterised modulatory site in the extracellular vestibule.
View Article and Find Full Text PDFCompr Physiol
April 2025
Department of Physiology and Biophysics, College of Medicine, University of Illinois at Chicago, Chicago, Illinois, USA.
This review focuses on p21-activated kinase 1 (Pak1), a multifunctional, highly conserved enzyme that regulates multiple downstream effectors present in many tissues. Upstream signaling via Ras-related small G-proteins, Cdc42/Rac1 promotes the activity of Pak1. Our hypothesis is that this signaling cascade is an important element in communication among the myocardium, adipose tissue, and pancreatic β-cells.
View Article and Find Full Text PDFATP-dependent switch/sucrose nonfermenting-type chromatin remodeling complexes (SWI/SNF CRCs) are multiprotein machineries altering chromatin structure, thus controlling the accessibility of genomic DNA to various regulatory proteins including transcription factors (TFs). SWI/SNF CRCs are highly evolutionarily conserved among eukaryotes. There are three main subtypes of SWI/SNF CRCs: canonical (cBAF), polybromo (pBAF), and noncanonical (ncBAF) in humans and their functional Arabidopsis counterparts SYD-associated SWI/SNF (SAS), MINU-associated SWI/SNF (MAS), and BRAHMA (BRM)-associated SWI/SNF (BAS).
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