Efficient crystal structure prediction based on the symmetry principle.

Nat Comput Sci

National Laboratory of Solid State Microstructures, School of Physics and Collaborative Innovation Center of Advanced Microstructures, Nanjing University, Nanjing, China.

Published: February 2025

Crystal structure prediction (CSP) is an evolving field aimed at discerning crystal structures with minimal prior information. Despite the success of various CSP algorithms, their practical applicability remains circumscribed, particularly for large and complex systems. Here, to address this challenge, we show an evolutionary structure generator within the MAGUS (Machine Learning and Graph Theory Assisted Universal Structure Searcher) framework, inspired by the symmetry principle. This generator extracts both global and local features of explored crystal structures using group and graph theory. By integrating an on-the-fly space group miner and fragment reorganizer, augmented by symmetry-kept mutation, our approach generates higher-quality initial structures, reducing the computational costs of CSP tasks. Benchmarking tests show up to fourfold performance improvements. The method also proves valid in complex phosphorus allotrope systems. Furthermore, we apply our approach to the diamond-silicon (111)-(7 × 7) surface system, identifying up to 42 metastable structures within an 18 meV Å energy range, demonstrating the efficacy of our approach in navigating challenging search spaces.

Download full-text PDF

Source
http://dx.doi.org/10.1038/s43588-025-00775-zDOI Listing

Publication Analysis

Top Keywords

crystal structure
8
structure prediction
8
symmetry principle
8
crystal structures
8
graph theory
8
efficient crystal
4
structure
4
prediction based
4
based symmetry
4
principle crystal
4

Similar Publications

Incompatible electrode/electrolyte interface often leads to dendrite growth, parasitic reactions and corrosion, posing significant challenges to the application of Zn anodes. Herein, we introduce a biomimetic antifreeze protein localized gel electrolyte (ALGE) with multifunctional capabilities to address these issues by combining electrolyte modification with interface optimization. ALGE modifies the Zn2+ solvation structure and the hydrogen-bond network adjacent to zinc anode, effectively suppressing hydrogen evolution.

View Article and Find Full Text PDF

The current research emphasis is on the development of wound dressings that can inhibit bacterial infections and facilitate the treatment of complex wound healing processes. In this study, nanofibrous mats of polyvinyl alcohol/chitosan/ZIF-67(PVA/Cs/ZIF-67) were prepared using an electrospinning technique, to investigate their antibacterial and regenerative properties in a rat model of full-thickness skin wounds. ZIF-67 nanoparticles, with an average size of approximately 373.

View Article and Find Full Text PDF

A pair of epimer with an unprecedented 4/7/6 tricyclic skeleton sesquiterpene (1 and 2) and five novel sesquiterpene (3-7) were isolated from Callicarpa nudiflora Hook. et Arn. Their structures were established by extensive spectroscopic analyses, single crystal X-ray diffraction, experimental electronic circular dichroism (ECD) spectra comparison and DP4+ probability analysis.

View Article and Find Full Text PDF

High performance of 5 V LiNiMnO cathode materials synthesized from recycled LiCO for sustainable Lithium-Ion batteries.

J Colloid Interface Sci

March 2025

Battery Research Center of Green Energy, Ming Chi University of Technology, New Taipei City 24301, Taiwan, ROC; Department of Chemical Engineering, Ming Chi University of Technology, New Taipei City 24301, Taiwan, ROC; Department of Chemical and Materials Engineering & Center for Sustainability and Energy Technologies, Chang Gung University, Taoyuan City 333, Taiwan, ROC. Electronic address:

Lithium has become a critical element in the modern era due to the emergence of lithium-ion battery (LIB) technologies as a mean to lessen the environmental burden created by the energy usage from conventional sources. In this study, LiCO was obtained from spent LIBs using a hydrometallurgical method and sintered with Taylor Flow Reactor (TFR) synthesized NiMn(OH) precursor to synthesize high-voltage LiNiMnO (R-LNMO) cathode material for the first time and conducted a series of tests and inspections for structure, morphology, electrochemical lithium cycling behaviour and its controlling factors, electronic conductivity, lithium ion diffusion characteristics and self-discharge behaviour. The results are benchmarked with C-LNMO synthesized through a similar processing but using LiCO obtained from a commercial source.

View Article and Find Full Text PDF

DNA nanostructures are typically assembled by thermal annealing in buffers containing magnesium. We demonstrate the assembly of DNA nanostructures at constant temperatures ranging from 4° to 50°C in solutions containing different counterions. The choice of counterions and the assembly temperature influence the isothermal assembly of several DNA motifs and designed three-dimensional DNA crystals.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!