DNA metabarcoding has played a pivotal role in advancing our understanding of the diversity and function of soil-inhabiting fungi. The Australian Microbiome Initiative has produced an extensive soil fungal metabarcoding dataset of more than 2000 plots across a breadth of ecosystems in Australia and Antarctica. Sequence data requires rigorous approaches for the integration of species occurrences into biodiversity platforms, addressing biases due to false positives or overinflated diversity estimates, among others. To tackle such biases, we conducted a rigorous analysis of the fungal dataset following best practices in fungal metabarcoding and integrated it with over 100 predictor variables to fast-track data exploration. We carefully validated our methodology based on studies conducted on historical versions of the dataset. Our approach generated robust information on Australian soil fungi that can be leveraged by end-users interested in biodiversity, biogeography, and conservation. This novel resource will unlock new frontiers in soil fungal research within the Southern Hemisphere and beyond.
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http://dx.doi.org/10.1038/s41597-025-04598-5 | DOI Listing |
FEMS Microbiol Lett
March 2025
Plant-Soil Interactions group, Agroscope, Reckenholzstrasse 191, 8046 Zurich, Switzerland.
As the human population grows, so does the demand for higher agricultural yields. As a result, agricultural intensification practices are increasing while soil health is often declining. Integrating the benefits of microorganisms into agricultural management systems can reduce the need for external resource inputs.
View Article and Find Full Text PDFPlant Physiol Biochem
March 2025
Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & Key Laboratory of Microbiology, College of Heilongjiang Province & School of Life Sciences, Heilongjiang University, Harbin, 150080, China. Electronic address:
Cold stress is a limiting factor for rice yield. Empirical evidence has demonstrated that arbuscular mycorrhizal fungi (AMF) can bolster the cold resilience of plants. In barren environments, AMF can promote host plant growth and resistance.
View Article and Find Full Text PDFDiagn Microbiol Infect Dis
March 2025
Microbiology Unit, Finnish Institute for Health and Welfare, FI-70701 Kuopio, Finland.
Legionella longbeachae is an emerging cause of Legionnaires' disease in Europe. We analysed data from the National Infectious Disease Register (NIDR) and the Legionella Reference Laboratory database to characterize L. longbeachae infections and diagnostics in Finland.
View Article and Find Full Text PDFInt J Syst Evol Microbiol
March 2025
Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Laboratorio de Biotecnología Microbiana. Prol. Carpio y Plan de Ayala s/n, Col. Santo Tomás, Ciudad de México, Alcaldía Miguel Hidalgo. C.P. 11340, Mexico.
Several and strains from the north of Mexico were isolated during the description of strains. , and were later described as novel species. Next, the Genomic Encyclopedia of Bacteria and Archaea project retrieved the genome sequences of several strains from the above species.
View Article and Find Full Text PDFCurr Microbiol
March 2025
College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, 410128, China.
Tobacco bacterial wilt (TBW), caused by Ralstonia solanacearum, significantly impacts tobacco yield and quality, leading to substantial economic losses. This study investigated the effects of the microbial agents JX (Pichia sp. J1 and Klebsiella oxytoca ZS4) on the soil properties, rhizospheric microbial community, tobacco agronomic traits, and TBW incidence through field experiments.
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