Hole C0020A during Ocean Drilling Expedition 337 is the deepest hole in scientific ocean drilling (depth of 2466 m below the seafloor). The presence of microbial and fungal communities serves as firm evidence for life within sediments. The isolated from the core and cultivable in the laboratory strain S. commune 20R-7-F01, which has existed in a deep subseafloor environment for over 20 million years, is being considered a high-quality genome model for studying its evolution and environmental adaptation mechanism. We questioned the origin of the strain from the sediments using high mutagenic simple sequence repeats of DNA. The full genome analysis of mono-, di-, tri-, and tetra-motifs of DNA revealed no regularities in the quantitative distribution of motifs in different S. commune genomes. At of common trinucleotide motifs loci, strain 20R-7-F01 has the highest percentage of similarity (48.8%) among East Asian strains, which indicates an intensive genetic exchange. According to a multidimensional scaling of 1938 common simple sequence repeats of DNA loci, no signs were found that would indicate the spatial and temporal isolation of the 20R-7-F01 strain. The extreme insufficient of water, and oxygen, high temperature and pressure at the level of 2 km below the ocean floor, and the tetrapolar mating system make it impossible growth of mycelium with different nuclear status and formation of basidiocarps. The general obtained data confirm the terrestrial origin of S. commune strain 20R-7-F01 and the territory of the Far East of the Russian Federation (approximately Khabarovsk, Primorsky Krai) is the probable place of origin.
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http://dx.doi.org/10.1038/s41598-024-84457-2 | DOI Listing |
Sci Rep
February 2025
Department of Phytoecology, Institute for Evolutionary Ecology, National Academy of Sciences of Ukraine, 37 Lebedeva Str, Kyiv, 03143, Ukraine.
Hole C0020A during Ocean Drilling Expedition 337 is the deepest hole in scientific ocean drilling (depth of 2466 m below the seafloor). The presence of microbial and fungal communities serves as firm evidence for life within sediments. The isolated from the core and cultivable in the laboratory strain S.
View Article and Find Full Text PDFInt J Biol Macromol
December 2023
State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing 210023, China. Electronic address:
Exopolysaccharides (EPS) produced by microorganisms play a vital role in physiological and ecological processes. However, the mechanisms of EPS synthesis and release in anaerobic environments remain poorly understood. Here, we provide the first evidence of anaerobic EPS synthesis by the fungus Schizophyllum commune 20R-7-F01, isolated from coal-bearing sediments ~2.
View Article and Find Full Text PDFInt J Biol Macromol
December 2022
State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing 210023, China. Electronic address:
Fungal polysaccharide is a kind of biomacromolecule with multiple biological activities, which has a wide application prospect and may play an important role in organisms to cope with extreme environments. Herein, we reported an extracellular polysaccharide (EPS) produced by Schizophyllum commune 20R-7-F01 that was isolated from subseafloor sediments at ~2 km below the seafloor, obtained during expedition 337. The monosaccharide of EPS was glucose and its molecular weight was 608.
View Article and Find Full Text PDFFront Microbiol
August 2022
State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing, China.
Laccases are ligninolytic enzymes that play a crucial role in various biological processes of filamentous fungi, including fruiting-body formation and lignin degradation. Lignin degradation is a complex process and its degradation in is greatly affected by the availability of oxygen. Here, a total of six putative laccase genes () were identified from the 20R-7-F01 genome.
View Article and Find Full Text PDFiScience
June 2022
State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing 210023, China.
To understand the genomic evolution and adaptation strategies of fungi to subseafloor sedimentary environments, we assembled the genome of strain 20R-7-F01 isolated from ∼2.0 km-deep, ∼20-millionyearsago (Mya) coal-bearing sediments. Phylogenomics study revealed a differentiation time of 28-73 Mya between this strain and the terrestrial type-strain H4-8, in line with sediment age records.
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