BAHD acyl-coenzyme A (CoA) transferases comprise a large family of enzymes in plants which transfer an acyl group from a CoA thioester to hydroxyl or amine groups to form esters or amides, respectively. Clade Vb of this family primarily utilizes hydroxycinnamoyl-CoA as the acyl donor. These enzymes are involved in biosynthesis of diverse specialized metabolites with functions such as structure (., lignin formation) and biotic/abiotic stress mitigation. The diversity of these enzymes has arisen from both divergent and convergent evolution, making it difficult to predict substrate specificity or enzyme function based on homology, and relatively few BAHD transferases have been characterized biochemically with respect to substrate specificity. We previously identified a hydroxycinnamoyl-CoA: tetrahydroxyhexanedioate hydroxycinnamoyl transferase (HHHT) from common bean capable of transferring hydroxycinnamic acids to mucic or saccharic acid to form the corresponding esters. Here, to better understand the structure/function relationships of this enzyme, we have further characterized it with respect to expression pattern, kinetic parameters, and predicted three-dimensional (3-D) structure and active site interactions with acceptor substrates. The gene was expressed predominantly in leaves and to a lesser extent flowers and shoots. values did not vary greatly among donor or among acceptor substrates (generally less than two-fold), while values were consistently higher for saccharic acid as substrate compared to mucic acid, leading to higher catalytic efficiency (as / ) for saccharic acid. Both acceptors had similar binding poses when docked into the active site, and the proximity of multiple hydroxyl groups to the catalytic His 150, especially for saccharic acid, might provide some insights into regiospecificity. These findings provide a foundation for better understanding how the 3-D structure of BAHD transferases relates to their substrate specificity, as we explore the chemistry of the active site and interactions with ligands. This could ultimately lead to better prediction of their function and ability to rationally design BAHD transferases to make useful and novel products.
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http://dx.doi.org/10.7717/peerj.19037 | DOI Listing |
Biochemistry
March 2025
Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India.
Base editing is a common mechanism by which organisms expand their genetic repertoire to access new functions. Here, we explore the mechanism of tRNA recognition in the bacterial deaminase TadA, which exclusively recognizes tRNA and converts the wobble base adenosine (A34) to inosine. We quantitatively evaluate the dynamics of tRNA binding by incorporating the fluorescent adenine analogue 2-aminopurine (2-AP) at position 34 in the wobble base of the anticodon loop.
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March 2025
Key Laboratory of Low Carbon Energy and Chemical Engineering of Gansu Province. School of Petrochemical Technology, Lanzhou University of Technology, Langongping Road 287, Lanzhou 730050, P. R. China.
The photoelectrochemical properties of hematite-based photoanodes are hindered by severe carrier recombination and poor reaction activity, which is a major challenge. Herein, we coupled zirconium-doped α-FeO (Zr:FeO) and phosphating cobalt molybdate electrocatalyst (P-CoMoO) to ameliorate the above difficulties. The conductivity and carrier density of hematite significantly increase by Zr doping.
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March 2025
Department of Life Sciences, University of Bath, Bath, BA2 7AY, United Kingdom. Electronic address:
The paraventricular thalamus (PVT) is a central node in the integration of stress- and reward-related information that may serve as a pivotal site for opioid receptors to exert their effects. Kappa opioid receptors (KOPrs) and mu opioid receptors (MOPrs) have dissociable and opposing roles in circuits of stress and reward. Interestingly, both are highly expressed in the PVT, however it is not known how aversive KOPr and rewarding MOPr signalling converges to dictate PVT activity and, by proxy, whole brain effects.
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March 2025
Department of Medical Biotechnology, School of Medicine, Alborz University of Medical Sciences, Karaj, Iran; Non-Communicable Diseases Research Center, Alborz University of Medical Sciences, Karaj, Iran. Electronic address:
L-asparaginase is a critical therapeutic enzyme for treating acute lymphoblastic leukemia (ALL), a common childhood malignancy. In this study, the L-asparaginase coding sequence from halophilic Vibrio sp. (GBPx3) was cloned, expressed in Escherichia coli, and characterized.
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March 2025
Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Kafrelsheikh University, Kafrelsheikh 33516, Egypt; Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Pharos University in Alexandria; Canal El Mahmoudia St., Alexandria 21648, Egypt. Electronic address:
In the current medical era, the proliferation and dissemination of drug-resistant strains of Mycobacterium tuberculosis continue to pose a significant worldwide health hazard, necessitating the development of new and innovative medications to combat tuberculosis. Decaprenylphosphoryl-β-D-ribose 2'-epimerase (DprE1) is a crucial enzyme for cell wall synthesis in Mycobacterium tuberculosis (Mtb). Its importance is due to its eminent contribution in forming lipoarabinomannan and arabinogalactan.
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