Liquid-liquid phase separation (LLPS) exhibited by intrinsically disordered proteins (IDPs) depends on the solvation state around the -regime, which separates good from poor solvent. Experimentally, the -solvent regime of the finite length () IDPs, as probed by small angle X-ray scattering (SAXS) and single molecular fluorescence resonance energy transfer (smFRET), is in disagreement. Using computer simulations of a coarse-grained IDP model, we address the effect of chain length on the -regime of IDPs with polar side chains (polyglutamine) and hydrophobic side chains (polyleucine) subject to varying concentrations of cosolvents , urea (denaturant) or trimethylamine N-oxide (protective osmolyte) in water. Due to their intrinsic stiffness, these IDPs are always expanded on short-length scales, independent of the solvent quality. As a result, for short IDP sequences ( to 25 residues), their propensity to exhibit LLPS cannot be inferred from single-chain properties. Further, for finite-size IDPs, the cosolvent concentration to attain the -regime ( ) extracted from the structure factor emulating SAXS and pair distances mimicking smFRET differs. They converge to the same cosolvent concentration only at large , indicating that finite size corrections vary for different IDP properties. We show that the radius of gyration ( ) of the IDPs in the -solvent regime satisfies the scaling relation , which can be exploited to accurately extract ( ). We demonstrate the importance of finite size aspects originating from the chain stiffness and thermal blob size in analyzing IDP properties to identify the -solvent regime.
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http://dx.doi.org/10.1093/pnasnexus/pgaf039 | DOI Listing |
Lab Chip
March 2025
Department of Mechanical Engineering, Stony Brook University, Stony Brook, NY 11794, USA.
We experimentally investigate droplet pattern formation in coaxial microchannels using ternary mixtures of two immiscible fluids and a miscible solvent. The influence of solvent concentration is examined through periodic pattern analysis of droplet flow and functional relationships are developed to determine the initial interfacial tension of dispersions made of aqueous mixtures of solvent and oil at short timescales, , when solvent diffusion into the continuous phase has a negligible effect on flow morphologies. We examine a wide range of flow rates and delineate vast flow maps of droplet regimes, including dripping and jetting flows, to clarify the hydrodynamic behavior of conjugate fluid mixtures in square microcapillaries.
View Article and Find Full Text PDFJ Phys Chem A
March 2025
Department of Chemistry, School of Natural Sciences, University of Manchester, Oxford Road, Manchester M13 9PL, U.K.
Most of the work in expanding the frontiers of single-molecule magnets employs the chemical design of new molecules to increase the size of the effective barrier () or the hysteresis temperature (). Here we explore how perturbing the local environment affects magnetic relaxation properties by dissolving [Dy(Cp)][B(CF)] in two different solvents: difluorobenzene (DFB) and dichloromethane (DCM). Surprisingly, we find no significant effects in the phonon-driven Raman-I regime at higher temperatures, but we do observe that the frozen-solution environment increases the rate of quantum tunneling of the magnetization (QTM) due to an increase in the size of the avoided level crossing.
View Article and Find Full Text PDFPNAS Nexus
February 2025
Solid State and Structural Chemistry Unit, Indian Institute of Science, Bengaluru, Karnataka 560012, India.
Liquid-liquid phase separation (LLPS) exhibited by intrinsically disordered proteins (IDPs) depends on the solvation state around the -regime, which separates good from poor solvent. Experimentally, the -solvent regime of the finite length () IDPs, as probed by small angle X-ray scattering (SAXS) and single molecular fluorescence resonance energy transfer (smFRET), is in disagreement. Using computer simulations of a coarse-grained IDP model, we address the effect of chain length on the -regime of IDPs with polar side chains (polyglutamine) and hydrophobic side chains (polyleucine) subject to varying concentrations of cosolvents , urea (denaturant) or trimethylamine N-oxide (protective osmolyte) in water.
View Article and Find Full Text PDFACS Electrochem
February 2025
Laboratory for Nanometallurgy, Department of Materials, ETH Zürich, Vladimir-Prelog-Weg 1-5/10, Zürich 8093, Switzerland.
Droplet-confined electrodeposition enables a precise deposition of three-dimensional, nanoscopic, and high purity metal structures. It aspires to fabricate intricate microelectronic devices, metamaterials, plasmonic structures, and functionalized surfaces. Yet, a major handicap of droplet-confined electrodeposition is the current lack of control over the process, which is owed to its dynamic nature and the nanoscopic size of the involved droplets.
View Article and Find Full Text PDFPhys Chem Chem Phys
February 2025
Department of Chemistry, University of Michigan 930 N. University Avenue, Ann Arbor, Michigan, 48109-1055, USA.
The wide availability of bio-derived alcohols provides the impetus to develop processes that convert them to valuable chemicals. The chloride ion is a redox mediator for electrocatalytic ethanol oxidation to 1,1-diethoxyethane (1,1-DEE) through an ethyl hypochlorite (EtOCl) intermediate, and this paper describes the chloride oxidation reaction (COR) to EtOCl on a glassy carbon (GC) electrode. Voltammetry measurements on a GC electrode in inert acetonitrile solvent combined with X-ray photoelectron spectroscopy (XPS) establish a Volmer step, where chloride ion from solution chemisorbs and is oxidized.
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