Lung adenocarcinoma (LUAD) has a heterogeneous prognosis and controversial postoperative treatment protocols. We aim to develop and validate a multimodal analysis framework that integrates CT images with H&E-stained whole-slide images (WSIs) to enhance risk stratification and predict adjuvant chemotherapy benefit in LUAD patients. We retrospectively collected data from 1039 resectable LUAD patients (stage I-III) across four centres, forming a training dataset (n = 303), two testing datasets (n = 197 and n = 228) for survival analysis, and a feature testing dataset (n = 311) for interpretability analysis. We extracted 487 tumour/peritumour radiomics features from CT images and 783 multiscale pathomics features from WSIs, characterising the shape of tumour (CT) and cancer nuclei (WSIs), as well as the intensity and texture of tumour/peritumour regions (CT) and tumour regions/epithelium/stroma (WSIs). A survival support vector machine (SVM) was employed to establish a radiopathomics signature using the optimal set of multimodal features, including 2 tumour radiomics features, 3 peritumour radiomics features, and 4 nuclei heterogeneity pathomics features. The radiopathomics signature outperformed both radiomics and pathomics signatures in predicting disease-free survival (DFS) (C-index: training dataset, 0.744 vs. 0.734 and 0.692; testing dataset 1, 0.719 vs. 0.701 and 0.638; testing dataset 2, 0.711 vs. 0.689 and 0.684), demonstrating greater robustness compared to the state-of-the-art deep learning integration approaches. It provided additional prognostic information beyond clinical risk factors (C-index of clinical plus radiopathomics vs. clinical models: training dataset, 0.763 vs. 0.676; testing dataset 1, 0.739 vs. 0.676; testing dataset 2, 0.711 vs. 0.699, p < 0.001). Compared to low-risk patients categorised by the radiopathomics signature, high-risk patients achieved comparable DFS when receiving adjuvant chemotherapy (training dataset, HR = 1.53, 95 % CI 0.85-2.73, p = 0.153; testing dataset 1 and 2, HR = 1.62, 95 % CI 0.92-2.85, p = 0.096), but had significantly worse DFS when only observed after surgery (training dataset, HR = 4.46, 95 % CI 2.82-7.05, p < 0.001; testing datasets 1 and 2, HR = 3.52, 95 % CI 2.26-5.49, p < 0.001), indicating the predictive value of the radiopathomics signature for adjuvant chemotherapy benefit (interaction p < 0.05). Further interpretability analysis revealed that the radiopathomics signature was associated with various prognostic/treatment-related biomarkers, including differentiation, immune phenotypes, and EGFR status. The multimodal integration framework offered a cost-effective approach for LUAD characterisation by leveraging complementary information from radiological and histopathological imaging. The radiopathomics signature demonstrated robust prognostic capabilities, providing valuable insights for postoperative treatment decisions.
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http://dx.doi.org/10.1016/j.canlet.2025.217557 | DOI Listing |
J Genet Eng Biotechnol
March 2025
Department of Veterinary Parasitology, College of Veterinary Science, Lala Lajpat Rai University of Veterinary and Animal Sciences, Hisar, Haryana 125004, India.
The hard tick Hyalomma dromedarii, a vector for numerous animal and human pathogens, was investigated for genetic diversity using the mitochondrial cytochrome C oxidase subunit I (cox I) and 16S ribosomal RNA (16S rRNA) genes. Hyalomma dromedarii sequences (n = 11 cox I; n = 7 16S rRNA) were deposited in GenBank (LC761179-89, LC761173-78, LC654692), showing 99.52-100 % (cox I) and 98.
View Article and Find Full Text PDFAnimal
February 2025
Dipartimento di Scienze Agrarie, Alimentari e Forestali, University of Palermo, 90128 Palermo, Italy. Electronic address:
Girgentana goats are an ancient breed with distinctive morphological, adaptive, and production traits, making this population an interesting model for studying the genetic architecture underlying these traits. These special features result from natural and human-mediated selection. In this study, we aimed to detect potential signatures of selection in the Girgentana genome by combining the following statistical methods: the integrated haplotype score (iHS), the standardised log-ratio of the integrated site-specific extended haplotype homozygosity test between pairs of populations (Rsb), the runs of homozygosity (ROH) islands and the population differentiation index (F).
View Article and Find Full Text PDFMed Image Anal
February 2025
School of Computing and Mathematical Sciences, University of Leicester, Leicester LE1 7RH, UK.
Accurate judgment and identification of polyp size is crucial in endoscopic diagnosis. However, the indistinct boundaries of polyps lead to missegmentation and missed cancer diagnoses. In this paper, a prompt-based polyp segmentation method (PPSM) is proposed to assist in early-stage cancer diagnosis during endoscopy.
View Article and Find Full Text PDFComput Biol Med
March 2025
Department of CSE, BUET, Dhaka 1000, Bangladesh. Electronic address:
Among various post-translational modifications (PTMs), predicting C-linked and S-linked glycosites is an essential task, yet experimental techniques such as Capillary Electrophoresis (CE), Enzymatic Deglycosylation, and Mass Spectrometry (MS) are expensive. Therefore, computational techniques are required to predict these glycosites. Here, different language model embeddings and sequential features were explored.
View Article and Find Full Text PDFJ Neural Eng
March 2025
Electrical and Computer Engineering, University of Tehran College of Engineering, North Kargar Street, Tehran, Tehran, Tehran, 1439957131, Iran (the Islamic Republic of).
Despite remarkable advances in EMG-based hand motor decoding, developing a practical and reliable decoder for robotic prosthetic hands remains unsolved. This study highlights inter-individual, inter-session, and intra-session variabilities of EMG signals as practical challenges and introduces a novel personalized and adaptive motor decoding framework, designed to mitigate their impact and improve hand motor decoding. A dataset was collected from twelve participants (8 male, 4 female), incorporating EMG signals from three forearm muscles during 20 repetitions of 9 distinct hand motions.
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