ParasitoBank dataset for diagnosing intestinal parasitism: Helminths and protozoa in coprological samples.

Data Brief

Sistemas dinámicos, instrumentación y control (SIDICO), Departamento de física, Universidad del Cauca, Colombia.

Published: February 2025

Intestinal parasitism is an infection that affects people worldwide, with populations in developing countries being at a higher risk of acquiring it. This infection is contracted for various reasons, mainly related to poor sanitary conditions and inadequate food practices, leading to multiple health issues such as malnutrition, intestinal obstructions, epilepsy, and others. Identifying parasitic species is essential for establishing appropriate antiparasitic therapy, which in turn helps reduce the risk of associated morbidities. For this reason, a dataset named "ParasitoBank" was created, containing 779 images of the visual field of fresh stool samples analysed under a microscope using the serial coprological technique. These images were acquired using a Motorola G84 mobile phone, and a data-labeling process resulted in a total of 1,620 intestinal parasites, with a particular focus on intestinal protozoa. The images have an approximate aspect ratio of 1:1 with a resolution of 2100 × 2100. Label information and some metadata for the images have been included in a JSON file following the "Common Objects in Context" (COCO) format. Finally, the entire dataset and label content have been arranged in a compressed file. The presented information facilitates the use of the data for various studies, spanning education and artificial intelligence development.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11786663PMC
http://dx.doi.org/10.1016/j.dib.2025.111279DOI Listing

Publication Analysis

Top Keywords

intestinal parasitism
8
intestinal
5
parasitobank dataset
4
dataset diagnosing
4
diagnosing intestinal
4
parasitism helminths
4
helminths protozoa
4
protozoa coprological
4
coprological samples
4
samples intestinal
4

Similar Publications

The golden-mantled howler monkey () represents an excellent sentinel species for use in One Health modeling because of its extensive natural range, regular contact with humans and domestic animals, and susceptibility to zoonotic diseases. The purpose of this research is to establish baseline health assessments for free ranging golden-mantled howler monkeys in Marino Las Baulas National Park, Costa Rica. In April 2013, seven free ranging golden-mantled howler monkeys were anesthetized for physical examinations and biological sample collection, including blood for hematology and blood gas analysis.

View Article and Find Full Text PDF

Background: Intestinal myiasis is a type of myiasis resulting from the accidental consumption of Clogmia albipunctata larvae. This type of myiasis generally displays symptoms such as nausea, vomiting, abdominal distention and discomfort, loss of appetite, weight loss, and intermittent diarrhea. It is a rare form of myiasis with relatively scarce literature in Nepal.

View Article and Find Full Text PDF

Background: Real-time PCR (qPCR) diagnostics developed for use in human clinical settings have been implemented to identify new animal hosts of the gastrointestinal protozoan Dientamoeba fragilis. The gut microbiome varies between species; unrecognised cross-reactivity could occur when applying these assays to new animal hosts. The use of qPCR diagnostics was assessed for the identification of new animal hosts of the gastrointestinal protozoan Dientamoeba fragilis.

View Article and Find Full Text PDF

Prevalence and genotype analysis of Cryptosporidium spp. in nine species of wild rodents in China.

Parasite

March 2025

College of Veterinary Medicine, Qingdao Agricultural University, Qingdao, Shandong Province 266109, PR China - College of Veterinary Medicine, College of Animal Science and Technology, Jilin Agricultural University, Changchun, Jilin Province 130118, PR China.

Cryptosporidium is a significant zoonotic parasite with broad distribution in both humans and rodents. In this study, 510 fecal samples were collected from nine species of wild rodents across Guangxi, Yunnan, and Hunan Provinces in China. Nested PCR analysis targeting the SSU rRNA gene revealed an overall Cryptosporidium infection rate of 1.

View Article and Find Full Text PDF

BackgroundLaboratory surveillance detected an unprecedented increase in spp. (predominantly ) in England and Wales in August 2023. Cases are not routinely followed up in all of England and Wales, and initial investigations identified no common exposures.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!