High yield and good quality are two predominant objectives of most of the wheat breeding programs. Modulating HMW-GS composition is an effective approach to improve grain quality without yield penalty. In this study, we first analyzed the background similarity of three near-isogenic lines (NILs) with 1Ax-null, 1Ax1 or 1Ax2∗ alleles in the background of cultivar Xiaoyan-22 at the protein and DNA levels. On this basis, the yield, yield-related agronomic traits, flour, dough, and bread qualities of the three lines were studied in the 2021-2022 and 2022-2023 seasons. The results showed that, compared to the 1Ax-null allele, the grain yield of the 1Ax1 or 1Ax2∗ allele was not changed, and the 1Ax1 allele averagely decreased protein yield by up to 4.9% and dough yield by up to 6.5%. Notably, the grain yield of the 1Ax2∗ allele was higher than that of the 1Ax1 allele. Meanwhile, compared to the 1Ax-null allele, the 1Ax1 allele averagely increased unextractable polymeric protein content (UPP%) by up to 5.8%, and dough stability time by up to 27.8%, which increased specific volume by up to 4.2%, and the 1Ax2∗ allele averagely increased UPP% by up to 24.2% and dough stability time by up to 111.1%, which increased specific volume by up to 14.4%. These findings indicate that introgression of the 1Ax2∗ allele has a potential to increase wheat quality without negatively affecting grain yield, which provides glutenin allele selection for breeding high-yield and high-quality wheat cultivars in the background of wheat cultivar Xiaoyan-22 and other similar cultivars.
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http://dx.doi.org/10.1016/j.plaphy.2025.109547 | DOI Listing |
Hum Genomics
January 2025
Department of Biology, Tor Vergata University of Rome, Via della Ricerca Scientifica 1, 00133, Rome, Italy.
Background: The Immunoglobulin Heavy Chain (IGH) genomic region is responsible for the production of circulating antibodies and warrants careful investigation for its association with COVID-19 characteristics. Multiple allelic variants within and across different IGH gene segments form a limited set of haplotypes. Previous studies have shown associations between some of these haplotypes and clinical outcomes of COVID-19.
View Article and Find Full Text PDFJ Neuroinflammation
January 2025
Department of Translational Neuroscience, Barrow Neurological Institute, Phoenix, AZ, 85013, USA.
The ApoE ε4 allele (APOEε4) is a major genetic risk factor for sporadic Alzheimer's disease (AD) and is linked to demyelination and cognitive decline. However, its effects on the lipid transporters apolipoprotein E (ApoE) and fatty acid-binding protein 7 (Fabp7), which are crucial for the maintenance of myelin in white matter (WM) during the progression of AD remain underexplored. To evaluate the effects of APOEε4 on ApoE, Fabp7 and myelin in the WM of the frontal cortex (FC), we examined individuals carrying one ε4 allele that came to autopsy with a premortem clinical diagnosis of no cognitive impairment (NCI), mild cognitive impairment (MCI) and mild to moderate AD compared with non-carrier counterparts.
View Article and Find Full Text PDFBMC Med Genomics
January 2025
Department of Hepatobiliary Pancreatic Surgery, Shenzhen People's Hospital, No.1017 Dongmen North Road, Shenzhen, 518020, Guangdong Province, China.
Background: Gallstones, a common surgical condition globally, affect around 20% of patients. The development of gallstones is linked to abnormal cholesterol and bilirubin metabolism, reduced gallbladder function, insulin resistance, biliary infections, and genetic factors. In addition to these factors, research has shown that mucins play a role in gallstone formation.
View Article and Find Full Text PDFBMC Genomics
January 2025
Department of Population Health and Reproduction, Davis School of Veterinary Medicine, University of California, Room 4206 Vet Med3A One Shields Ave, Davis, CA, 95616, USA.
Background: Allele-specific expression (ASE) analysis provides a nuanced view of cis-regulatory mechanisms affecting gene expression.
Results: An equine ASE analysis was performed, using integrated Iso-seq and short-read RNA sequencing data from four healthy Thoroughbreds (2 mares and 2 stallions) across 9 tissues from the Functional Annotation of Animal Genomes (FAANG) project. Allele expression was quantified by haplotypes from long-read data, with 42,900 allele expression events compared.
BMC Genomics
January 2025
Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark.
Background: The burden of Clostridioides difficile as a nosocomial- and community-acquired pathogen has been increasing over the recent decades, including reports of severe outbreaks. Molecular and virulence genotyping are central for the epidemiological surveillance of this pathogen, but need to balance accuracy and rapid turnaround time of the results. While Illumina short-read sequencing has been adopted as the gold standard to investigate C.
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