Iris: A Next Generation Digital Pathology Rendering Engine.

J Pathol Inform

University of Michigan Medical School, Department of Pathology, 2800 Plymouth Road, Ann Arbor, MI 48109-2800, USA.

Published: January 2025

Digital pathology is a tool of rapidly evolving importance within the discipline of pathology. Whole slide imaging promises numerous advantages; however, adoption is limited by challenges in ease of use and speed of high-quality image rendering relative to the simplicity and visual quality of glass slides. Herein, we introduce Iris, a new high-performance digital pathology rendering system. Specifically, we outline and detail the performance metrics of Iris Core, the core rendering engine technology. Iris Core comprises machine code modules written from the ground up in C++ and using Vulkan, a low-level and low-overhead cross-platform graphical processing unit application program interface, and our novel rapid tile buffering algorithms. We provide a detailed explanation of Iris Core's system architecture, including the stateless isolation of core processes, interprocess communication paradigms, and explicit synchronization paradigms that provide powerful control over the graphical processing unit. Iris Core achieves slide rendering at the sustained maximum frame rate on all tested platforms (120 FPS) and buffers an entire new slide field of view, without overlapping pixels, in 10 ms with enhanced detail in 30 ms. Further, it is able to buffer and compute high-fidelity reduction-enhancements for viewing low-power cytology with increased visual quality at a rate of 100-160 μs per slide tile, and with a cumulative median buffering rate of 1.36 GB of decompressed image data per second. This buffering rate allows for an entirely new field of view to be fully buffered and rendered in less than a single monitor refresh on a standard display, and high detail features within 2-3 monitor refresh frames. These metrics far exceed previously published specifications, beyond an order of magnitude in some contexts. The system shows no slowing with high use loads, but rather increases performance due to graphical processing unit cache control mechanisms and is "future-proof" due to near unlimited parallel scalability.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11742306PMC
http://dx.doi.org/10.1016/j.jpi.2024.100414DOI Listing

Publication Analysis

Top Keywords

digital pathology
12
iris core
12
graphical processing
12
processing unit
12
pathology rendering
8
rendering engine
8
visual quality
8
field view
8
buffering rate
8
monitor refresh
8

Similar Publications

Cellular dynamics of cervical remodelling: insights from preterm and term labour.

Arch Gynecol Obstet

January 2025

Department of Pathology, Instituto Português de Oncologia do Porto, Rua Dr. António Bernardino de Almeida, 4200-072, Porto, Portugal.

Introduction: Preterm birth remains a global health challenge with significant perinatal morbidity and mortality rates. Despite extensive research, the underlying mechanisms triggering preterm birth remain elusive, needing a deeper understanding of cervical cellular remodelling processes.

Purpose: This study aims to elucidate the cellular mechanisms underlying cervical remodelling in spontaneous preterm labour (PTL) compared to term labour (TL), focusing on the roles of inflammatory cells and fibroblasts.

View Article and Find Full Text PDF

Challenges in standardizing preimplantation kidney biopsy assessments and the potential of AI-Driven solutions.

Curr Opin Nephrol Hypertens

January 2025

Department of Microbiology, Immunology and Transplantation, KU Leuven.

Purpose Of Review: This review explores the variability in preimplantation kidney biopsy processing methods, emphasizing their impact on histological interpretation and allocation decisions driven by biopsy findings. With the increasing use of artificial intelligence (AI) in digital pathology, it is timely to evaluate whether these advancements can overcome current challenges and improve organ allocation amidst a growing organ shortage.

Recent Findings: Significant inconsistencies exist in biopsy methodologies, including core versus wedge sampling, frozen versus paraffin-embedded processing, and variability in pathologist expertise.

View Article and Find Full Text PDF

Discrepancies in PD-L1 expression, lymphocyte infiltration, and tumor mutational burden in non-small cell lung cancer and matched brain metastases.

Transl Lung Cancer Res

December 2024

Department of Pathology, Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Tianjin's Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin, China.

Background: Differences in the immune microenvironment and responses to immunotherapy may exist between primary non-small cell lung cancer (NSCLC) and brain metastases (BMs). This study aimed to investigate discrepancies in programmed death-ligand 1 (PD-L1) expression, tumor-infiltrating lymphocytes (TILs), tertiary lymphoid structures (TLS), and tumor mutational burden (TMB) between matched BMs and primary tumors (PTs) in NSCLC.

Methods: Twenty-six pairs of surgically resected BMs and corresponding PTs from NSCLC patients were collected.

View Article and Find Full Text PDF

Iris: A Next Generation Digital Pathology Rendering Engine.

J Pathol Inform

January 2025

University of Michigan Medical School, Department of Pathology, 2800 Plymouth Road, Ann Arbor, MI 48109-2800, USA.

Digital pathology is a tool of rapidly evolving importance within the discipline of pathology. Whole slide imaging promises numerous advantages; however, adoption is limited by challenges in ease of use and speed of high-quality image rendering relative to the simplicity and visual quality of glass slides. Herein, we introduce Iris, a new high-performance digital pathology rendering system.

View Article and Find Full Text PDF

Background & Aims: Biliary abnormalities in autoimmune hepatitis (AIH) and interface hepatitis in primary biliary cholangitis (PBC) occur frequently, and misinterpretation may lead to therapeutic mistakes with a negative impact on patients. This study investigates the use of a deep learning (DL)-based pipeline for the diagnosis of AIH and PBC to aid differential diagnosis.

Methods: We conducted a multicenter study across six European referral centers, and built a library of digitized liver biopsy slides dating from 1997 to 2023.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!