Atom's Dynamics and Crystal Structure: An Ordinal Pattern Method.

J Phys Chem A

Institute of Materials Engineering, University of Silesia in Katowice, 75 Pułku Piechoty 1A, 41-500 Chorzów, Poland.

Published: January 2025

The ubiquitous nature of thermal fluctuations poses a limitation on the identification of crystal structures. However, the trajectory of an atom carries a fingerprint of its surroundings. This rationalizes the search for a method that can determine the local atomic configuration via the analysis of the movement of an individual atom. Here, we report, while using molecular modeling, how a statistical analysis of a single-atom speed trajectory, represented by ordinal patterns, distinguishes between actual crystal structures. Using the Shannon entropy of ordinal patterns enabled discernment of the studied high-pressure silicon phases. Identification of the atoms occupying the 2(c) and 6(f) Wyckoff positions of the r8 crystal revealed an increase in the developed method's accuracy with trajectory length. The proposed concept of studying the structure of crystals offers new opportunities in solid-solid phase transformation studies.

Download full-text PDF

Source
http://dx.doi.org/10.1021/acs.jpca.4c06151DOI Listing

Publication Analysis

Top Keywords

crystal structures
8
ordinal patterns
8
atom's dynamics
4
crystal
4
dynamics crystal
4
crystal structure
4
structure ordinal
4
ordinal pattern
4
pattern method
4
method ubiquitous
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!