Development and validation of an ultrasensitive qPCR method to identify and quantify EGFR T790M in cell-free DNA.

Bioanalysis

Bioanalytical Services Department, WuXi AppTec (Shanghai) Co. Ltd, Shanghai, China.

Published: January 2025

Background: Circulating tumor DNA (ctDNA) is a promising biomarker for cancer prognosis and drug development. A major challenge in the ctDNA determination method is discriminating ctDNA from highly similar but significantly more abundant wild-type DNA sensitively and accurately.

Method: An ultrasensitive qPCR method termed Triple Enrichment Amplification of Mutation PCR (TEAM-PCR) was developed to detect EGFR T790M mutation.

Results: EGFR T790M was quantified over the assay range of 25-10 copies/reaction in the presence of 10 wild-type copies. This method was fully validated following the essential bioanalysis guidance, with the limit of detection (LOD) being five copies/reaction.

Conclusion: This study established and validated a qPCR-based strategy to detect EGFR T790M mutation with ultra-high sensitivity and reliability.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11749345PMC
http://dx.doi.org/10.1080/17576180.2025.2451527DOI Listing

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