Alteration analysis (ALA), an unsupervised chemometric technique, was evaluated for its ability to discover statistically significant trends in chromatographic data sets. Recently introduced, adoption of ALA has been limited due to uncertainty regarding its sensitivity to minor changes, and there are no rules implementing ALA especially for multivariate data sets such as liquid or gas chromatography coupled to mass spectrometry. Using in-silico data sets, ALA limits of discovery for various signal-to-noises (S/Ns), rates of change across samples, and a number of samples were assessed. For 10 samples, ALA discovered changes of ∼2% across each sample for low S/Ns (15-50), ∼1% change across each sample for moderate S/Ns (65-200), and as little as a 0.1% change at high S/Ns. ALA was also evaluated for unresolved chromatographic peaks, detecting changes down to a resolution of 0.01. In tandem with ALA, two-dimensional correlation analysis (2DCOR), a nonquantitative technique, was employed post-ALA processing to provide unique insights into the relationships between the chemical changes across simulated data sets. Finally, ALA and 2DCOR were applied to the pyrolysis gas chromatography-mass spectrometry (pyGC-MS) of Kraton G1650, a styrene-ethylene-butylene-stryrene (SEBS) polymer, pyrolyzed at temperatures ranging from 350 to 700 °C. A total of 523 statistically significant chemical compounds were discovered. The ALA output was fed into 2DCOR, and a subset of the data was evaluated to understand the relationship between the chemical changes of four selected statistically significant compounds.
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January 2025
Marine Biotechnology Fish Nutrition and Health Division, Central Marine Fisheries Research Institute, Post Box No 1603 Ernakulam North PO., Kochi, 682018, Kerala, India.
Mussels, particularly Perna viridis, are vital sentinel species for toxicology and biomonitoring in environmental health. This species plays a crucial role in aquaculture and significantly impacts the fisheries sector. Despite the ecological and economic importance of this species, its omics resources are still scarce.
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January 2025
Department of Infectious Diseases and Public Health, City University of Hong Kong, Kowloon Tong, Hong Kong.
Black carp (Mylopharyngodon piceus) is one of the "four famous domestic fishes" in China and an important economic fish in freshwater aquaculture. A high-quality genome is essential for advancing future biological research and breeding programs for this species. In this study, we aimed to generate a high-quality chromosome-level genome assembly of black carp using Nanopore and Hi-C technologies.
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January 2025
Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center-University of Freiburg, Freiburg, Germany.
The characteristics of data produced by omics technologies are pivotal, as they critically influence the feasibility and effectiveness of computational methods applied in downstream analyses, such as data harmonization and differential abundance analyses. Furthermore, variability in these data characteristics across datasets plays a crucial role, leading to diverging outcomes in benchmarking studies, which are essential for guiding the selection of appropriate analysis methods in all omics fields. Additionally, downstream analysis tools are often developed and applied within specific omics communities due to the presumed differences in data characteristics attributed to each omics technology.
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January 2025
School of Medicine, Anhui University of Science and Technology, Huainan, 232001, China.
Ultrasound is a primary diagnostic tool commonly used to evaluate internal body structures, including organs, blood vessels, the musculoskeletal system, and fetal development. Due to challenges such as operator dependence, noise, limited field of view, difficulty in imaging through bone and air, and variability across different systems, diagnosing abnormalities in ultrasound images is particularly challenging for less experienced clinicians. The development of artificial intelligence (AI) technology could assist in the diagnosis of ultrasound images.
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January 2025
Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
As the occurrence of human diseases and conditions increase, questions continue to arise about their linkages to chemical exposure, especially for per-and polyfluoroalkyl substances (PFAS). Currently, many chemicals of concern have limited experimental information available for their use in analytical assessments. Here, we aim to increase this knowledge by providing the scientific community with multidimensional characteristics for 175 PFAS and their resulting 281 ion types.
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