Identification of f.a., sp. nov. and large indels in the rRNA cistron that split the genus.

Int J Syst Evol Microbiol

National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology Group, MACS-Agharkar Research Institute, Pune, India.

Published: January 2025

Yeast strains representing a novel asexual ascomycetous species were isolated from seven flowers. Sequencing of the chromosomal regions coding for the D1/D2 domains of the large subunit ribosomal RNA, the ITS1-5.8S-ITS2 segments and parts of the gene coding for the small subunit ribosomal RNA showed that the isolates were conspecific. Comparative analysis of these sequences and the corresponding sequences of the type strains of ascomycetous yeasts revealed that the strains represent a hitherto undescribed species belonging to the subclade of the genus . The new species is osmotolerant and can develop invasive pseudohyphae, but does not form spores. For the new species, the name f.a. (forma asexualis) is proposed. The holotype, preserved in a metabolically inactive state, is CBS 12960 (extype cultures: 2-1361 and CCY 90-2-1, NCAIM Y.02123). The GenBank accession numbers of barcode sequences are JX515983 (D1/D2 domain), JX515985 (ITS1-5.8S-ITS2 and partial 18S rRNA gene), PQ613837 ( partial sequence) and PQ613838 ( partial sequence). MycoBank: MB855459. The analysis of the D1/D2 and internal transcribed spacer (ITS) sequences of the type strains of species of the genus identified multiple multinucleotide indels that can be used as taxonomic markers (InDel markers). The indel patterns of the subclades are very different and homogeneous within the subclades. This result reinforces the idea raised, but also refuted, in previous studies that the subclades may represent different genera.

Download full-text PDF

Source
http://dx.doi.org/10.1099/ijsem.0.006629DOI Listing

Publication Analysis

Top Keywords

subunit ribosomal
8
ribosomal rna
8
sequences type
8
type strains
8
partial sequence
8
markers indel
8
species
5
identification nov
4
nov large
4
large indels
4

Similar Publications

In many bacteria, the location of the mRNA start codon is determined by a short ribosome binding site sequence that base pairs with the 3'-end of 16S rRNA (rRNA) in the 30S subunit. Many groups have changed these short sequences, termed the Shine-Dalgarno (SD) sequence in the mRNA and the anti-Shine-Dalgarno (ASD) sequence in 16S rRNA, to create "orthogonal" ribosomes to enable the synthesis of orthogonal polymers in the presence of the endogenous translation machinery. However, orthogonal ribosomes are prone to SD-independent translation.

View Article and Find Full Text PDF

Glucocorticosteroids remain the most common pharmaceutical approach for the treatment of equine asthma but can be associated with significant side effects, including respiratory microbiome alterations. The goal of the study was to assess the impact of 2% lidocaine nebulization, a projected alternative treatment of equine asthma, on the healthy equine respiratory microbiota. A prospective, randomized, controlled, blinded, 2-way crossover study was performed, to assess the effect of 1 mg/kg 2% lidocaine (7 treatments over 4 days) on the equine respiratory microbiota compared to control horses (saline and no treatment).

View Article and Find Full Text PDF

Background: Freshwater fish are affected with much parasitic diseases, among the most common are Henneguyosis caused by myxozoans of the genus Henneguya, which exhibit great diversity in fish from South America, particularly in the Brazilian Amazon.

Purpose: In this present study, we describe the morphological and phylogenetic aspects of the small ribosomal subunit (SSU rDNA) of two new species of Henneguya infecting the gills from Hypophthalmus marginatus, a freshwater catfish from the Amazon.

Methods: In 148 specimens, has been observed cyst formation in different regions of the gills, intrafilamentary and intralamellar.

View Article and Find Full Text PDF

spp. are common zoonotic intestinal protozoa, which can lead to serious intestinal diseases in both humans and animals through fecal-oral transmission, leading to significant economic losses and public health challenges. To reveal the prevalence of in sheep and cattle in Shanxi Province, North China, fecal samples were collected from 311 sheep, 392 dairy cattle, and 393 beef cattle from three representative counties in the northern, central, and southern regions of Shanxi Province.

View Article and Find Full Text PDF

Molecular Phylogenetics and Estimation of Evolutionary Divergence and Biogeography of the Family Cordycipitaceae (Ascomycota, Hypocreales).

J Fungi (Basel)

January 2025

State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

The Cordycipitaceae family of insecticidal fungi is widely distributed in nature, is the most complex in the order Hypocreales (Ascomycota), with members displaying a diversity of morphological characteristics and insect host ranges. Based on Bayesian evolutionary analysis of five genomic loci(the small subunit of ribosomal RNA (SSU) gene, the large subunit of ribosomal RNA (LSU) gene, the translation elongation factor 1-α () gene, the largest subunit of RNA polymerase II (), and the second largest subunit of RNA polymerase II (), we inferred the divergence times for members of the Cordycipitaceae, improving the internal phylogeny of this fungal family. Molecular clock analyses indicate that the ancestor of occurred in the Paleogene period (34.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!