A PHP Error was encountered

Severity: Warning

Message: file_get_contents(https://...@pubfacts.com&api_key=b8daa3ad693db53b1410957c26c9a51b4908&a=1): Failed to open stream: HTTP request failed! HTTP/1.1 429 Too Many Requests

Filename: helpers/my_audit_helper.php

Line Number: 176

Backtrace:

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 176
Function: file_get_contents

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 250
Function: simplexml_load_file_from_url

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 1034
Function: getPubMedXML

File: /var/www/html/application/helpers/my_audit_helper.php
Line: 3152
Function: GetPubMedArticleOutput_2016

File: /var/www/html/application/controllers/Detail.php
Line: 575
Function: pubMedSearch_Global

File: /var/www/html/application/controllers/Detail.php
Line: 489
Function: pubMedGetRelatedKeyword

File: /var/www/html/index.php
Line: 316
Function: require_once

h-CMD: An efficient hybrid fast centroid and quasi-centroid molecular dynamics method for the simulation of vibrational spectra. | LitMetric

h-CMD: An efficient hybrid fast centroid and quasi-centroid molecular dynamics method for the simulation of vibrational spectra.

J Chem Phys

Division of Energy, Matter and Systems, School of Science and Engineering, University of Missouri-Kansas City, Kansas City, Missouri 64110, USA.

Published: January 2025

Developing efficient path integral (PI) methods for atomistic simulations of vibrational spectra in heterogeneous condensed phases and interfaces has long been a challenging task. Here, we present the h-CMD method, short for hybrid centroid molecular dynamics, which combines the recently introduced fast quasi-CMD (f-QCMD) method with fast CMD (f-CMD). In this scheme, molecules that are believed to suffer more seriously from the curvature problem of CMD, e.g., water, are treated with f-QCMD, while the rest, e.g., solid surfaces, are treated with f-CMD. To test the accuracy of the newly introduced scheme, the infrared spectra of the interfacial D2O confined in the archetypal ZIF-90 framework are simulated using h-CMD compared to a variety of other PI methods, including thermostatted ring-polymer molecular dynamics (T-RPMD) and partially adiabatic CMD as well as f-CMD and experiment as reference. Comparisons are also made with classical MD, where nuclear quantum effects are neglected entirely. Our detailed comparisons at different temperatures of 250-600 K show that h-CMD produces O-D stretches that are in close agreement with the experiment, correcting the known curvature problem and redshifting of the stretch peaks of CMD. h-CMD also corrects the known issues associated with too artificially dampened and broadened spectra of T-RPMD, which leads to missing the characteristic doublet feature of the interfacial confined water, rendering it unsuitable for these systems. The new h-CMD method broadens the applicability of f-QCMD to heterogeneous condensed phases and interfaces, where defining curvilinear coordinates for the entire system is not feasible.

Download full-text PDF

Source
http://dx.doi.org/10.1063/5.0248115DOI Listing

Publication Analysis

Top Keywords

molecular dynamics
12
vibrational spectra
8
heterogeneous condensed
8
condensed phases
8
phases interfaces
8
h-cmd method
8
curvature problem
8
h-cmd
6
h-cmd efficient
4
efficient hybrid
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!