Vertebral collapse (VC) following osteoporotic vertebral compression fracture (OVCF) often requires aggressive treatment, necessitating an accurate prediction for early intervention. This study aimed to develop a predictive model leveraging deep neural networks to predict VC progression after OVCF using magnetic resonance imaging (MRI) and clinical data. Among 245 enrolled patients with acute OVCF, data from 200 patients were used for the development dataset, and data from 45 patients were used for the test dataset. To construct an accurate prediction model, we explored two backbone architectures: convolutional neural networks and vision transformers (ViTs), along with various pre-trained weights and fine-tuning methods. Through extensive experiments, we built our model by performing parameter-efficient fine-tuning of a ViT model pre-trained on a large-scale biomedical dataset. Attention rollouts indicated that the contours and internal features of the compressed vertebral body were critical in predicting VC with this model. To further improve the prediction performance of our model, we applied the augmented prediction strategy, which uses multiple MRI frames and achieves a significantly higher area under the curve (AUC). Our findings suggest that employing a biomedical foundation model fine-tuned using a parameter-efficient method, along with augmented prediction, can significantly enhance medical decisions.
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http://dx.doi.org/10.1038/s41598-024-82902-w | DOI Listing |
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11685640 | PMC |
Background: microRNAs (miRNAs) are small RNAs involved in regulating gene expression by repressing target protein-coding genes. Hundreds of miRNAs are expressed in human brain, but our understanding of their role in Alzheimer's disease (AD) and cognitive decline is limited.
Method: We performed miRNA differential expression analysis using small RNA sequencing data generated from dorsolateral prefrontal cortex samples from 641 participants of the Religious Orders Study (ROS) and Memory and Aging Project (MAP).
Clin Chem
January 2025
Center for Genomic Medicine, Department of Medicine, Massachusetts General Hospital, Boston, MA, United States.
Background: Polygenic risk scores (PRS) are measures of genetic susceptibility to human health traits. With the advent of large data repositories combining genetic data and phenotypic information, PRS are providing valuable insights into the genetic architecture of complex diseases and are transforming the landscape of precision medicine.
Content: PRS have emerged as tools with clinical utility in human disease.
Transl Anim Sci
December 2024
Department of Animal Science, University of Nebraska-Lincoln, Lincoln, NE.
The Targhee breed is important to range sheep production in the Western United States. The objective of this research was to integrate industry sires participating in national genetic evaluation through the National Sheep Improvement Program (NSIP) into the U.S.
View Article and Find Full Text PDFSci Rep
January 2025
School of Mechanical Engineering, Center of Excellence in Energy Conversion, Sharif University of Technology, Tehran, Iran.
Dropwise condensation (DWC) is a widely studied vapor-liquid phase-change process that has attracted significant research attention due to its exceptional energy transfer efficiency. Therefore, it is highly important to predict the heat transfer rate during DWC and the factors that affect it. This study presents a computational fluid dynamics (CFD) investigation on DWC heat transfer under diverse circumstances for a single droplet on inclined and rough surfaces with Wenzel structure.
View Article and Find Full Text PDFNat Commun
January 2025
Department of Electronic Engineering, Tsinghua University, Beijing, China.
Deep generative models have garnered significant attention for their efficiency in drug discovery, yet the synthesis of proposed molecules remains a challenge. Retrosynthetic planning, a part of computer-assisted synthesis planning, addresses this challenge by recursively decomposing molecules using symbolic rules and machine-trained scoring functions. However, current methods often treat each molecule independently, missing the opportunity to utilize shared synthesis patterns and repeat pathways, which may contribute from known synthesis routes to newly emerging, similar molecules, a notable challenge with AI-generated small molecules.
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