[Investigating jellyfish diet with DNA macrobarcoding: A case study in ].

Ying Yong Sheng Tai Xue Bao

Liaoning Ocean and Fisheries Science Research Institute/Key Laboratory of Protection and Utilization of Aquatic Germplasm Resource, Ministry of Agriculture and Rural Affairs/Key Laboratory of Molecular Biology for Marine Fishery, Dalian 116023, Liaoning, China.

Published: October 2024

We investigated food composition and feeding selectivity of jellyfish () from the coastal aquaculture ponds in Liaodong Bay by DNA metabarcoding technology. The DNA from environmental water samples and stomach contents of were extracted and sequenced by high-throughput sequencing with 18S rDNA V4 region and mitochondrial cytochrome c oxidase subunit I (COI) as metabarcoding markers. Based on 18S rDNA metabarcoding, we detected 27 phyla in the stomach contents of , in which Mollusc was the dominant phylum followed by Arthropod, and 34 phyla in the environmental water samples, in which Pyrrophyta was the dominant phylum followed by Ciliophora and Ascomycota. Using COI metabarcoding, 18 phyla were detected in the stomach contents of , with Mollusc as the dominant phylum and followed by Arthropod. 22 phyla were detected in the environmental water samples, in which Proteobacteria was the dominant phylum followed by Pyrrophyta and Arthropod. Results of both methods indicated food included Mollusc, Arthropod, Streptophyta, Ciliophora, Pyrrophyta, Bacillariophyta, Chlorophyta, fungi, bacteria, etc. We analyzed the feeding selectivity of by the Ivlev selection index and found that they preferred small- and medium-sized zooplankton like Mollusc and Arthropod. Our results showed that DNA metabarcoding technology has the potential to investigate the feeding habits of jellyfish species.

Download full-text PDF

Source
http://dx.doi.org/10.13287/j.1001-9332.202410.032DOI Listing

Publication Analysis

Top Keywords

dominant phylum
16
environmental water
12
water samples
12
stomach contents
12
feeding selectivity
8
dna metabarcoding
8
metabarcoding technology
8
18s rdna
8
coi metabarcoding
8
contents mollusc
8

Similar Publications

Seasonal variation of microbial community and diversity in the Taiwan Strait sediments.

Environ Res

January 2025

Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen 361102, China; State Key Laboratory of Marine Environmental Science and International Institute of Sustainability Science, College of the Environment and Ecology, Xiamen University, Xiamen 361102, China.

Article Synopsis
  • Human activities and ocean currents in the Taiwan Strait show seasonal variations, but how marine microbes respond to these changes under human and climate stress is not fully understood.
  • Using 16S rRNA gene amplicon sequencing, the study analyzed sediment samples and found distinct seasonal patterns in microbial diversity, with Proteobacteria and Desulfobacterota as dominant groups.
  • Key factors like iron concentrations, heavy metals, and temperature fluctuations significantly influenced microbial community structures, while certain core microbial groups and marker species could serve as indicators for monitoring the health of the Taiwan Strait ecosystem.
View Article and Find Full Text PDF

This study evaluated the effects of kaempferol (KAE), and vitamin E (VE) on the performance, reproductive hormones, and the composition of the cecum and uterus microbiota in late-laying hens. A total of 192 49-week-old Jinghong No. 1 laying hens were randomly divided into four groups, with six replicates in each group and eight laying hens in each replicate, pre-reared for one week and formally tested for ten weeks.

View Article and Find Full Text PDF

Aeration is a common pretreatment method to enhance biogas production via anaerobic digestion of waste organic feedstocks such as unused food. While impacts on downstream anaerobic digestion have been intensively investigated, the consequence of aeration on the microbial community in food waste has not been characterised. Food waste has a low pH resulting from the dominance of lactic acid bacteria within the Firmicutes phylum.

View Article and Find Full Text PDF

Bacteria, fungi, archaea, and viruses are reflective organisms that indicate soil health. Investigating the impact of crude oil pollution on the community structure and interactions among bacteria, fungi, archaea, and viruses in Calamagrostis epigejos soil can provide theoretical support for remediating crude oil pollution in Calamagrostis epigejos ecosystems. In this study, Calamagrostis epigejos was selected as the research subject and subjected to different levels of crude oil addition (0 kg/hm, 10 kg/hm, 40 kg/hm).

View Article and Find Full Text PDF

Abundant and active community members respond to diel cycles in hot spring phototrophic mats.

ISME J

January 2025

Division of Biosphere Sciences and Engineering, Carnegie Science, Stanford, CA, United States.

Photosynthetic microbial mats in hot springs can provide insights into the diel behaviors of communities in extreme environments. In this habitat, photosynthesis dominates during the day, leading to super-oxic conditions, with a rapid transition to fermentation and anoxia at night. Multiple samples were collected from two springs over several years to generate metagenomic and metatranscriptomic datasets.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!