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Crystal structure, Hirshfeld surface analysis, and DFT and mol-ecular docking studies of 6-cyanona-phthalen-2-yl 4-(benz-yloxy)benzoate. | LitMetric

AI Article Synopsis

  • - The compound CHNO exhibits specific torsion angles of -173.7° and -174.8°, indicating an -type conformation, with significant dihedral angles between its aromatic components and the cyanona-phthalene ring.
  • - In the crystalline form, molecules are interconnected through weak C-H⋯O and C-H⋯π interactions, forming chains that are strengthened by π-π stacking between naphthalene and phenyl benzoate rings, with measured centroid-to-centroid distances.
  • - The molecular structure was optimized using density functional theory (DFT), showing a HOMO-LUMO energy gap of 3.17 eV, and molecular docking with SARS-Covid-2 protein indicated a promising

Article Abstract

In the title compound, CHNO, the torsion angle associated with the phenyl benzoate group is -173.7 (2)° and that for the benz-yloxy group is -174.8 (2)° establishing an -type conformation. The dihedral angles between the ten-membered cyanona-phthalene ring and the aromatic ring of the phenyl benzoate and the benz-yloxy fragments are 40.70 (10) and 87.51 (11)°, respectively, whereas the dihedral angle between the aromatic phenyl benzoate and the benz-yloxy fragments is 72.30 (13)°. In the crystal, the mol-ecules are linked by weak C-H⋯O inter-actions forming (4) chains propagating parallel to [010]. The packing is consolidated by three C-H⋯π inter-actions and two π-π stacking inter-actions between the aromatic rings of naphthalene and phenyl benzoate with centroid-to-centroid distances of 3.9698 (15) and 3.8568 (15) Å, respectively. Inter-molecular inter-actions were qu-anti-fied using Hirshfeld surface analysis. The mol-ecular structure was further optimized by density functional theory (DFT) at the B3LYP/6-311+ G(d,p) level, revealing that the energy gap between HOMO and LUMO is 3.17 eV. Mol-ecular docking studies were carried out for the title compound as a ligand and SARS-Covid-2(PDB ID:7QF0) protein as a receptor giving a binding affinity of -9.5 kcal mol.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11660483PMC
http://dx.doi.org/10.1107/S2056989024009964DOI Listing

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