Context: In this work, we investigate three elementary reactions involved in the production of glycine in the interstellar medium (ISM) employing trustworthy electronic structure and chemical kinetics methodologies. We considered three elementary reactions: ( ), ( ) and ( ) under conditions consistent with hot molecular cores of massive star-forming regions. Our results indicate that the elementary reactions are feasible in these environments, with reaction barriers of 18.8 ( ) and 18.4 ( ). The rate coefficients for these reactions were calculated to be 1.4 and 9.3 at 1000 K. Additionally, if the products of ( ) couple on a singlet surface, connects to the ground state of glycine via a barrierless path presenting a rate coefficient equal to 8.7 at 298.15 K. Given that the molecules involved in these reactions have been detected in regions such as Sgr B2, our findings suggest that these elementary reactions should be included in mechanisms to study the production of glycine in such locations.
Methods: The single-reference electronic structure calculations were carried out with the ORCA 4.1.2 package while the multi-reference calculations were performed with the COLUMBUS 7.0 package. The DFT functionals employed were M06-2X, B97X, and B97X-D3, with the 6-31+G* and def2-TZVP, and for the wave function-based calculations, the CCSD(T), DLPNO-CCSD(T), MRCI, and CASSF methods were employed using the aug-cc-pVDZ, aug-cc-pVTZ, and aug-cc-pVQZ basis sets. The chemical kinetic calculations for the elementary reactions with well-defined saddle points were performed using the Pilgrim package employing the TST, CVT, and CVT/SCT approaches.
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http://dx.doi.org/10.1007/s00894-024-06241-3 | DOI Listing |
J Am Chem Soc
December 2024
Department of Chemistry, Hanyang University, Seoul 04763, Republic of Korea.
The electrochemical nitrate reduction reaction (NORR) involves multiple hydrogenation and deoxygenation steps, which compete with the hydrogen evolution reaction (HER). Therefore, NORR driven in acidic media is challenging in spite of advantageous fast hydrogen transfers in its elementary steps. The findings presented in this article first demonstrate that the NORR is significantly activated even in acidic lithium nitrate solutions at LiNO concentrations exceeding 6 m on a Pt electrode (the highly effective catalyst for HER) by the formation of a "hydronium-in-salt" electrolyte (HISE), a new type of aqueous high concentration salt electrolyte.
View Article and Find Full Text PDFBeilstein J Nanotechnol
December 2024
Centro de Investigaciones en Dispositivos Semiconductores (CIDS-ICUAP), Benemérita Universidad Autónoma de Puebla (BUAP). Col. San Manuel, Cd. Universitaria, Av. San Claudio y 14 sur, Edif. IC5 y IC6. Puebla, Pue., 72507 México.
In this study, a simulation of the elementary chemical reactions during SiO film growth in a hot filament chemical vapor deposition (HFCVD) reactor was carried out using a 2D model. For the 2D simulation, the continuity, momentum, heat, and diffusion equations were solved numerically by the software COMSOL Multiphysics based on the finite element method. The model allowed for the simulation of the key parameters of the HFCVD reactor.
View Article and Find Full Text PDFAdv Mater
December 2024
School of Materials Science and Engineering, Zhengzhou University, Zhengzhou, 450001, China.
J Am Chem Soc
December 2024
Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States.
Direct air capture (DAC) technologies are limited by the poor understanding of the dynamic role of interfaces in modulating the chemisorption of CO from air into solutions. While the reactivity of aqueous amine-based solvents in the bulk environment is strongly inhibited by nonequilibrium solvent effects, promoting DAC at interfaces posits a possibility to reduce the coupling with the solvent and significantly accelerate DAC. Building on an experimentally proven concept to bring an anionic glycine absorbent to the interface through ion-pairing interactions with a positively charged surfactant, we establish the fundamental time scales for key elementary steps involved in DAC with rate theory and enhanced-sampling molecular dynamics simulations.
View Article and Find Full Text PDFBioinformatics
December 2024
BioTeC+, KU Leuven, 9000, Belgium.
Motivation: Analysis of metabolic networks through extreme rays such as Extreme Pathways and Elementary Flux Modes has been shown to be effective for many applications. However, due to the combinatorial explosion of candidate vectors, their enumeration is currently limited to small- and medium-scale networks (typically less than 200 reactions). Partial enumeration of the extreme rays is shown to be possible, but either relies on generating them one-by-one or by implementing a sampling step in the enumeration algorithms.
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